RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 NHSQ6T4R5 1651 aa33.2■■■□□ 2.9
SSBP3-202ENST00000357475 CABP4P57796 275 aa33.19■■■□□ 2.9
SSBP3-202ENST00000357475 TEFQ10587 303 aa33.19■■■□□ 2.9
SSBP3-202ENST00000357475 LAS1LQ9Y4W2 734 aaKnown RBP33.19■■■□□ 2.9
SSBP3-202ENST00000357475 SYTL4Q96C24 671 aaPredicted RBP33.18■■■□□ 2.9
SSBP3-202ENST00000357475 KDM3BQ7LBC6 1761 aa33.17■■■□□ 2.9
SSBP3-202ENST00000357475 GOLGA2Q08379 1002 aa33.16■■■□□ 2.9
SSBP3-202ENST00000357475 ZNF853P0CG23 659 aa33.15■■■□□ 2.9
SSBP3-202ENST00000357475 TAF7Q15545 349 aaPredicted RBP33.15■■■□□ 2.9
SSBP3-202ENST00000357475 PIGBQ92521 554 aa33.15■■■□□ 2.9
SSBP3-202ENST00000357475 TMOD3Q9NYL9 352 aa33.14■■■□□ 2.9
SSBP3-202ENST00000357475 PAPPAQ13219 1627 aa33.14■■■□□ 2.9
SSBP3-202ENST00000357475 IL16Q14005 1332 aa33.14■■■□□ 2.9
SSBP3-202ENST00000357475 FAM196AQ6ZSG2 479 aa33.13■■■□□ 2.89
SSBP3-202ENST00000357475 TSR2Q969E8 191 aaKnown RBP33.13■■■□□ 2.89
SSBP3-202ENST00000357475 BTAF1O14981 1849 aa33.13■■■□□ 2.89
SSBP3-202ENST00000357475 KCNQ3O43525 872 aa33.12■■■□□ 2.89
SSBP3-202ENST00000357475 CALD1Q05682 793 aaKnown RBP33.12■■■□□ 2.89
SSBP3-202ENST00000357475 CFAP44Q96MT7 982 aa33.12■■■□□ 2.89
SSBP3-202ENST00000357475 IFT57Q9NWB7 429 aa33.12■■■□□ 2.89
SSBP3-202ENST00000357475 SLFN5Q08AF3 891 aa33.12■■■□□ 2.89
SSBP3-202ENST00000357475 SLC39A6Q13433 755 aa33.12■■■□□ 2.89
SSBP3-202ENST00000357475 BTBD11A6QL63 1104 aa33.11■■■□□ 2.89
SSBP3-202ENST00000357475 CHL1O00533 1208 aa33.11■■■□□ 2.89
SSBP3-202ENST00000357475 MBIPQ9NS73 344 aa33.11■■■□□ 2.89
SSBP3-202ENST00000357475 TSPYL4Q9UJ04 414 aa33.09■■■□□ 2.89
SSBP3-202ENST00000357475 GNAI1P63096 354 aa33.08■■■□□ 2.89
SSBP3-202ENST00000357475 ASAP1Q9ULH1 1129 aa33.07■■■□□ 2.89
SSBP3-202ENST00000357475 FANCIQ9NVI1 1328 aa33.07■■■□□ 2.89
SSBP3-202ENST00000357475 UBR2Q8IWV8 1755 aa33.07■■■□□ 2.88
SSBP3-202ENST00000357475 TRIM37O94972 964 aa33.07■■■□□ 2.88
SSBP3-202ENST00000357475 E9PSI1 815 aa33.06■■■□□ 2.88
SSBP3-202ENST00000357475 TRMT2AQ8IZ69 625 aaKnown RBP33.06■■■□□ 2.88
SSBP3-202ENST00000357475 ATG3Q9NT62 314 aa33.05■■■□□ 2.88
SSBP3-202ENST00000357475 DUSP27Q5VZP5 1158 aa33.03■■■□□ 2.88
SSBP3-202ENST00000357475 TNS1Q9HBL0 1735 aaKnown RBP33.03■■■□□ 2.88
SSBP3-202ENST00000357475 KCPQ6ZWJ8 1503 aa33.03■■■□□ 2.88
SSBP3-202ENST00000357475 KRT24Q2M2I5 525 aa33.02■■■□□ 2.88
SSBP3-202ENST00000357475 ZNF790Q6PG37 636 aa33.02■■■□□ 2.88
SSBP3-202ENST00000357475 BCL11BQ9C0K0 894 aaPredicted RBP33.02■■■□□ 2.88
SSBP3-202ENST00000357475 MYH16Q9H6N6 1097 aa33.01■■■□□ 2.87
SSBP3-202ENST00000357475 BABAM1Q9NWV8 329 aa33.01■■■□□ 2.87
SSBP3-202ENST00000357475 EIF4A1P60842 406 aaKnown RBP32.97■■■□□ 2.87
SSBP3-202ENST00000357475 ZNF496Q96IT1 587 aaPredicted RBP32.97■■■□□ 2.87
SSBP3-202ENST00000357475 C5P01031 1676 aa32.97■■■□□ 2.87
SSBP3-202ENST00000357475 EXOSC9Q06265 439 aaKnown RBP32.97■■■□□ 2.87
SSBP3-202ENST00000357475 PTCD1O75127 700 aaKnown RBP32.96■■■□□ 2.87
SSBP3-202ENST00000357475 TTC5Q8N0Z6 440 aa32.96■■■□□ 2.87
SSBP3-202ENST00000357475 C8orf58Q8NAV2 365 aa32.96■■■□□ 2.87
SSBP3-202ENST00000357475 ILDR2Q71H61 639 aa32.94■■■□□ 2.86
SSBP3-202ENST00000357475 TSPYL6Q8N831 410 aa32.94■■■□□ 2.86
SSBP3-202ENST00000357475 PALLDQ8WX93 1383 aa32.94■■■□□ 2.86
SSBP3-202ENST00000357475 LY75O60449 1722 aa32.94■■■□□ 2.86
SSBP3-202ENST00000357475 PRAMEF22A3QJZ6 481 aa32.92■■■□□ 2.86
SSBP3-202ENST00000357475 ELL2O00472 640 aaPredicted RBP32.92■■■□□ 2.86
SSBP3-202ENST00000357475 SLC4A9Q96Q91 983 aa32.92■■■□□ 2.86
SSBP3-202ENST00000357475 HEG1Q9ULI3 1381 aa32.92■■■□□ 2.86
SSBP3-202ENST00000357475 TJP1Q07157 1748 aa32.9■■■□□ 2.86
SSBP3-202ENST00000357475 RBM42Q9BTD8 480 aaKnown RBP32.9■■■□□ 2.86
SSBP3-202ENST00000357475 FMNL2Q96PY5 1086 aa32.89■■■□□ 2.86
SSBP3-202ENST00000357475 KCNQ4P56696 695 aa32.87■■■□□ 2.85
SSBP3-202ENST00000357475 APBA3O96018 575 aa32.87■■■□□ 2.85
SSBP3-202ENST00000357475 SMARCC1Q92922 1105 aaPredicted RBP32.87■■■□□ 2.85
SSBP3-202ENST00000357475 GIGYF1O75420 1035 aaPredicted RBP32.86■■■□□ 2.85
SSBP3-202ENST00000357475 LOC102724428A0A0B4J2F2 783 aa32.85■■■□□ 2.85
SSBP3-202ENST00000357475 SIK1P57059 783 aa32.85■■■□□ 2.85
SSBP3-202ENST00000357475 LAMB4A4D0S4 1761 aa32.84■■■□□ 2.85
SSBP3-202ENST00000357475 TWISTNBQ3B726 338 aaPredicted RBP32.84■■■□□ 2.85
SSBP3-202ENST00000357475 ZNF831Q5JPB2 1677 aa32.82■■■□□ 2.84
SSBP3-202ENST00000357475 VAMP4O75379 141 aa32.82■■■□□ 2.84
SSBP3-202ENST00000357475 CICQ96RK0 1608 aaPredicted RBP32.81■■■□□ 2.84
SSBP3-202ENST00000357475 SNRPA1P09661 255 aaKnown RBP32.81■■■□□ 2.84
SSBP3-202ENST00000357475 ITPK1Q13572 414 aa32.81■■■□□ 2.84
SSBP3-202ENST00000357475 DNAJC10Q8IXB1 793 aa32.81■■■□□ 2.84
SSBP3-202ENST00000357475 USP16Q9Y5T5 823 aa32.81■■■□□ 2.84
SSBP3-202ENST00000357475 NECTIN2Q92692 538 aa32.8■■■□□ 2.84
SSBP3-202ENST00000357475 TAF1LQ8IZX4 1826 aa32.8■■■□□ 2.84
SSBP3-202ENST00000357475 COL5A3P25940 1745 aaPredicted RBP32.8■■■□□ 2.84
SSBP3-202ENST00000357475 ATP6V1AP38606 617 aa32.79■■■□□ 2.84
SSBP3-202ENST00000357475 RGPD3A6NKT7 1758 aaPredicted RBP32.78■■■□□ 2.84
SSBP3-202ENST00000357475 RGPD4Q7Z3J3 1758 aa32.78■■■□□ 2.84
SSBP3-202ENST00000357475 PROM2Q8N271 834 aa32.78■■■□□ 2.84
SSBP3-202ENST00000357475 TCERG1O14776 1098 aaKnown RBP32.77■■■□□ 2.84
SSBP3-202ENST00000357475 VSIG10Q8N0Z9 540 aa32.77■■■□□ 2.84
SSBP3-202ENST00000357475 LRRC4BQ9NT99 713 aa32.77■■■□□ 2.84
SSBP3-202ENST00000357475 PLSCR1O15162 318 aa32.77■■■□□ 2.84
SSBP3-202ENST00000357475 EIF2S2P20042 333 aaKnown RBP32.77■■■□□ 2.84
SSBP3-202ENST00000357475 CCNL1Q9UK58 526 aaPredicted RBP32.77■■■□□ 2.84
SSBP3-202ENST00000357475 EN1Q05925 392 aaPredicted RBP32.75■■■□□ 2.83
SSBP3-202ENST00000357475 DEFB132Q7Z7B7 95 aa32.75■■■□□ 2.83
SSBP3-202ENST00000357475 TXNRD1Q16881 649 aa32.74■■■□□ 2.83
SSBP3-202ENST00000357475 MYH14Q7Z406 1995 aaKnown RBP32.74■■■□□ 2.83
SSBP3-202ENST00000357475 HOXB7P09629 217 aa32.73■■■□□ 2.83
SSBP3-202ENST00000357475 LINC00116Q8NCU8 138 aa32.73■■■□□ 2.83
SSBP3-202ENST00000357475 PIP4K2AP48426 406 aaPredicted RBP32.72■■■□□ 2.83
SSBP3-202ENST00000357475 HDGFL1Q5TGJ6 251 aa32.72■■■□□ 2.83
SSBP3-202ENST00000357475 UPF1Q92900 1129 aaKnown RBP eCLIP32.72■■■□□ 2.83
SSBP3-202ENST00000357475 CYP19A1P11511 503 aaPredicted RBP32.72■■■□□ 2.83
SSBP3-202ENST00000357475 SF3B2Q13435 895 aaKnown RBP32.71■■■□□ 2.83
SSBP3-202ENST00000357475 EZH2Q15910 746 aaKnown RBP32.71■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms