RNA–Protein interactions for RNA: ENST00000298746.4

TRUB1-201, Transcript of TruB pseudouridine synthase family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRUB1, Length 3,408 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRUB1-201ENST00000298746 ZSCAN20P17040 1043 aaPredicted RBP13.67□□□□□ -0.22
TRUB1-201ENST00000298746 CGNQ9P2M7 1197 aaKnown RBP13.67□□□□□ -0.22
TRUB1-201ENST00000298746 ATP7AQ04656 1500 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 SURF6O75683 361 aaKnown RBP13.66□□□□□ -0.22
TRUB1-201ENST00000298746 CPA1P15085 419 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 DNM1Q05193 864 aaKnown RBP13.66□□□□□ -0.22
TRUB1-201ENST00000298746 CWC27Q6UX04 472 aaKnown RBP13.66□□□□□ -0.22
TRUB1-201ENST00000298746 G2E3Q7L622 706 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 CKAP2LQ8IYA6 745 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 ZNF710Q8N1W2 664 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 RTL1A6NKG5 1358 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 NPHP1O15259 732 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 PYCARDQ9ULZ3 195 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 QRICH2Q9H0J4 1663 aa13.66□□□□□ -0.22
TRUB1-201ENST00000298746 TPD52L1Q16890 204 aaPredicted RBP13.65□□□□□ -0.22
TRUB1-201ENST00000298746 GTPBP4Q9BZE4 634 aaKnown RBP13.65□□□□□ -0.22
TRUB1-201ENST00000298746 SYT1P21579 422 aa13.65□□□□□ -0.22
TRUB1-201ENST00000298746 PTGS1P23219 599 aa13.65□□□□□ -0.22
TRUB1-201ENST00000298746 CCT4P50991 539 aaKnown RBP13.65□□□□□ -0.22
TRUB1-201ENST00000298746 SPG7Q9UQ90 795 aa13.65□□□□□ -0.22
TRUB1-201ENST00000298746 MED14O60244 1454 aa13.65□□□□□ -0.22
TRUB1-201ENST00000298746 IL13P35225 146 aa13.65□□□□□ -0.22
TRUB1-201ENST00000298746 SHROOM2Q13796 1616 aa13.65□□□□□ -0.22
TRUB1-201ENST00000298746 ZNF853P0CG23 659 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 CASTP20810 708 aaKnown RBP13.64□□□□□ -0.23
TRUB1-201ENST00000298746 CUL4AQ13619 759 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 ZFYVE16Q7Z3T8 1539 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 TPM3P06753 285 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 ANAPC15P60006 121 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 KIAA1210Q9ULL0 1709 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 GNAI3P08754 354 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 CCDC186Q7Z3E2 898 aa13.64□□□□□ -0.23
TRUB1-201ENST00000298746 UNC5CLQ8IV45 518 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 CCDC112Q8NEF3 446 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 LRRFIP2Q9Y608 721 aaKnown RBP13.63□□□□□ -0.23
TRUB1-201ENST00000298746 PTPRCP08575 1304 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 RIMS2Q9UQ26 1411 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 BICD2Q8TD16 824 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 LIMCH1Q9UPQ0 1083 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 PIK3R4Q99570 1358 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 NPATQ14207 1427 aa13.63□□□□□ -0.23
TRUB1-201ENST00000298746 F13A1P00488 732 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 UBTFL1P0CB47 393 aaPredicted RBP13.62□□□□□ -0.23
TRUB1-201ENST00000298746 TNNT1P13805 278 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 AK2P54819 239 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 UTP14CQ5TAP6 766 aaKnown RBP13.62□□□□□ -0.23
TRUB1-201ENST00000298746 ADGRB2O60241 1585 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 RAPGEF3O95398 923 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 GJB2P29033 226 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 MAPK8IP2Q13387 824 aaPredicted RBP13.62□□□□□ -0.23
TRUB1-201ENST00000298746 LUZP1Q86V48 1076 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 JAKMIP1Q96N16 626 aaKnown RBP13.62□□□□□ -0.23
TRUB1-201ENST00000298746 NUP62CLQ9H1M0 184 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 PNMA6EA0A0J9YXQ4 647 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 FBXW7Q969H0 707 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 TNMDQ9H2S6 317 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 NCKAP5LQ9HCH0 1330 aa13.62□□□□□ -0.23
TRUB1-201ENST00000298746 MAP3K11Q16584 847 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 LARP1BQ659C4 914 aaKnown RBP13.61□□□□□ -0.23
TRUB1-201ENST00000298746 TULP4Q9NRJ4 1543 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 FAM173BQ6P4H8 233 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 TFIP11Q9UBB9 837 aaKnown RBP13.61□□□□□ -0.23
TRUB1-201ENST00000298746 FAM135BQ49AJ0 1406 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 LRRC7Q96NW7 1537 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 KIF20AO95235 890 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 ERCC6L2Q5T890 1561 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 NECAB1Q8N987 351 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 KIAA1524Q8TCG1 905 aa13.61□□□□□ -0.23
TRUB1-201ENST00000298746 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.61□□□□□ -0.23
TRUB1-201ENST00000298746 V9GYY5 206 aaPredicted RBP13.61□□□□□ -0.23
TRUB1-201ENST00000298746 GOLGA6L19H0YKK7 550 aa13.6□□□□□ -0.23
TRUB1-201ENST00000298746 LRMPQ12912 555 aa13.6□□□□□ -0.23
TRUB1-201ENST00000298746 BBXQ8WY36 941 aaPredicted RBP13.6□□□□□ -0.23
TRUB1-201ENST00000298746 CNTROBQ8N137 903 aa13.6□□□□□ -0.23
TRUB1-201ENST00000298746 ZFYVE9O95405 1425 aa13.6□□□□□ -0.23
TRUB1-201ENST00000298746 ERICH4A6NGS2 130 aa13.6□□□□□ -0.23
TRUB1-201ENST00000298746 EIF2S2P20042 333 aaKnown RBP13.6□□□□□ -0.23
TRUB1-201ENST00000298746 KRT85P78386 507 aa13.6□□□□□ -0.23
TRUB1-201ENST00000298746 PDRG1Q9NUG6 133 aa13.6□□□□□ -0.23
TRUB1-201ENST00000298746 PRPF40BQ6NWY9 871 aaKnown RBP13.59□□□□□ -0.23
TRUB1-201ENST00000298746 FOXO3O43524 673 aa13.59□□□□□ -0.23
TRUB1-201ENST00000298746 ZKSCAN1P17029 563 aaPredicted RBP13.59□□□□□ -0.23
TRUB1-201ENST00000298746 FGD1P98174 961 aa13.59□□□□□ -0.23
TRUB1-201ENST00000298746 STK3Q13188 491 aa13.59□□□□□ -0.23
TRUB1-201ENST00000298746 TXNDC2Q86VQ3 553 aa13.59□□□□□ -0.23
TRUB1-201ENST00000298746 CEBPZQ03701 1054 aaKnown RBP13.58□□□□□ -0.23
TRUB1-201ENST00000298746 NAP1L2Q9ULW6 460 aaPredicted RBP13.58□□□□□ -0.23
TRUB1-201ENST00000298746 FOSBP53539 338 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 FAM200AQ8TCP9 573 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 CYP46A1Q9Y6A2 500 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 YTHDC2Q9H6S0 1430 aaKnown RBP13.58□□□□□ -0.24
TRUB1-201ENST00000298746 BECN2A8MW95 431 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 CHL1O00533 1208 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 SRGAP3O43295 1099 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 FLIIQ13045 1269 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 FILIP1Q7Z7B0 1213 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 TCEANC2Q96MN5 208 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 OSBPL3Q9H4L5 887 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 SLC52A1Q9NWF4 448 aa13.58□□□□□ -0.24
TRUB1-201ENST00000298746 TAOK2Q9UL54 1235 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms