RNA–Protein interactions for RNA: ENST00000262570.9

CHCHD3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD3, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-201ENST00000262570 UPF1Q92900 1129 aaKnown RBP eCLIP21.8■■□□□ 1.083e-7■■■□□ 18.4
CHCHD3-201ENST00000262570 ITGB4P16144 1822 aa21.8■■□□□ 1.08
CHCHD3-201ENST00000262570 VIRMAQ69YN4 1812 aaKnown RBP21.78■■□□□ 1.08
CHCHD3-201ENST00000262570 APBA3O96018 575 aa21.78■■□□□ 1.08
CHCHD3-201ENST00000262570 TAF7Q15545 349 aaPredicted RBP21.78■■□□□ 1.08
CHCHD3-201ENST00000262570 ASAP1Q9ULH1 1129 aa21.77■■□□□ 1.08
CHCHD3-201ENST00000262570 SF3B2Q13435 895 aaKnown RBP21.76■■□□□ 1.07
CHCHD3-201ENST00000262570 ATG3Q9NT62 314 aa21.76■■□□□ 1.07
CHCHD3-201ENST00000262570 BTBD11A6QL63 1104 aa21.75■■□□□ 1.07
CHCHD3-201ENST00000262570 BTAF1O14981 1849 aa21.75■■□□□ 1.07
CHCHD3-201ENST00000262570 PLSCR1O15162 318 aa21.74■■□□□ 1.07
CHCHD3-201ENST00000262570 CALD1Q05682 793 aaKnown RBP21.74■■□□□ 1.07
CHCHD3-201ENST00000262570 TNS1Q9HBL0 1735 aaKnown RBP21.74■■□□□ 1.07
CHCHD3-201ENST00000262570 ZNF521Q96K83 1311 aa21.74■■□□□ 1.07
CHCHD3-201ENST00000262570 SIPA1L3O60292 1781 aaPredicted RBP21.74■■□□□ 1.07
CHCHD3-201ENST00000262570 SLC39A6Q13433 755 aa21.74■■□□□ 1.07
CHCHD3-201ENST00000262570 SMARCC1Q92922 1105 aaPredicted RBP21.74■■□□□ 1.07
CHCHD3-201ENST00000262570 HNRNPUQ00839 825 aaKnown RBP eCLIP21.73■■□□□ 1.07
CHCHD3-201ENST00000262570 ZNF790Q6PG37 636 aa21.73■■□□□ 1.07
CHCHD3-201ENST00000262570 WDR63Q8IWG1 891 aa21.73■■□□□ 1.07
CHCHD3-201ENST00000262570 BABAM1Q9NWV8 329 aa21.73■■□□□ 1.07
CHCHD3-201ENST00000262570 MIS18AQ9NYP9 233 aa21.73■■□□□ 1.07
CHCHD3-201ENST00000262570 CHL1O00533 1208 aa21.72■■□□□ 1.07
CHCHD3-201ENST00000262570 CFAP44Q96MT7 982 aa21.72■■□□□ 1.07
CHCHD3-201ENST00000262570 PALLDQ8WX93 1383 aa21.72■■□□□ 1.07
CHCHD3-201ENST00000262570 ZNF853P0CG23 659 aa21.71■■□□□ 1.07
CHCHD3-201ENST00000262570 BAG6P46379 1132 aa21.71■■□□□ 1.07
CHCHD3-201ENST00000262570 DEFB132Q7Z7B7 95 aa21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 IFT57Q9NWB7 429 aa21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 IL16Q14005 1332 aa21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 KCNQ3O43525 872 aa21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 EN1Q05925 392 aaPredicted RBP21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 TTC5Q8N0Z6 440 aa21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 CAMKK2Q96RR4 588 aa21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 LAS1LQ9Y4W2 734 aaKnown RBP21.7■■□□□ 1.06
CHCHD3-201ENST00000262570 GNAI1P63096 354 aa21.69■■□□□ 1.06
CHCHD3-201ENST00000262570 PROM2Q8N271 834 aa21.69■■□□□ 1.06
CHCHD3-201ENST00000262570 TSPYL4Q9UJ04 414 aa21.69■■□□□ 1.06
CHCHD3-201ENST00000262570 PAPPAQ13219 1627 aa21.67■■□□□ 1.06
CHCHD3-201ENST00000262570 LOC102724428A0A0B4J2F2 783 aa21.67■■□□□ 1.06
CHCHD3-201ENST00000262570 PTCD1O75127 700 aaKnown RBP21.67■■□□□ 1.06
CHCHD3-201ENST00000262570 SIK1P57059 783 aa21.67■■□□□ 1.06
CHCHD3-201ENST00000262570 EZH2Q15910 746 aaKnown RBP21.66■■□□□ 1.06
CHCHD3-201ENST00000262570 TXNRD1Q16881 649 aa21.66■■□□□ 1.06
CHCHD3-201ENST00000262570 ZNF496Q96IT1 587 aaPredicted RBP21.66■■□□□ 1.06
CHCHD3-201ENST00000262570 SLC4A9Q96Q91 983 aa21.66■■□□□ 1.06
CHCHD3-201ENST00000262570 MBIPQ9NS73 344 aa21.66■■□□□ 1.06
CHCHD3-201ENST00000262570 RBM42Q9BTD8 480 aaKnown RBP21.65■■□□□ 1.06
CHCHD3-201ENST00000262570 SPINK5Q9NQ38 1064 aaPredicted RBP21.65■■□□□ 1.06
CHCHD3-201ENST00000262570 KCPQ6ZWJ8 1503 aa21.65■■□□□ 1.06
CHCHD3-201ENST00000262570 EIF4A1P60842 406 aaKnown RBP21.65■■□□□ 1.06
CHCHD3-201ENST00000262570 GOLGA2Q08379 1002 aa21.65■■□□□ 1.06
CHCHD3-201ENST00000262570 SLC27A3Q5K4L6 730 aa21.65■■□□□ 1.06
CHCHD3-201ENST00000262570 SOCS7O14512 581 aa21.64■■□□□ 1.05
CHCHD3-201ENST00000262570 FMNL2Q96PY5 1086 aa21.64■■□□□ 1.05
CHCHD3-201ENST00000262570 LRRC4BQ9NT99 713 aa21.64■■□□□ 1.05
CHCHD3-201ENST00000262570 CCNL1Q9UK58 526 aaPredicted RBP21.64■■□□□ 1.05
CHCHD3-201ENST00000262570 RGPD3A6NKT7 1758 aaPredicted RBP21.64■■□□□ 1.05
CHCHD3-201ENST00000262570 RGPD4Q7Z3J3 1758 aa21.64■■□□□ 1.05
CHCHD3-201ENST00000262570 LY75O60449 1722 aa21.64■■□□□ 1.05
CHCHD3-201ENST00000262570 ZBED9Q6R2W3 1325 aa21.63■■□□□ 1.05
CHCHD3-201ENST00000262570 KDM3BQ7LBC6 1761 aa21.63■■□□□ 1.05
CHCHD3-201ENST00000262570 VSIG10Q8N0Z9 540 aa21.63■■□□□ 1.05
CHCHD3-201ENST00000262570 UBR2Q8IWV8 1755 aa21.63■■□□□ 1.05
CHCHD3-201ENST00000262570 ATP6V1AP38606 617 aa21.62■■□□□ 1.05
CHCHD3-201ENST00000262570 KCNQ4P56696 695 aa21.62■■□□□ 1.05
CHCHD3-201ENST00000262570 HEG1Q9ULI3 1381 aa21.62■■□□□ 1.05
CHCHD3-201ENST00000262570 TSR2Q969E8 191 aaKnown RBP21.61■■□□□ 1.05
CHCHD3-201ENST00000262570 ITPK1Q13572 414 aa21.61■■□□□ 1.05
CHCHD3-201ENST00000262570 E9PSI1 815 aa21.6■■□□□ 1.05
CHCHD3-201ENST00000262570 SLFN5Q08AF3 891 aa21.6■■□□□ 1.05
CHCHD3-201ENST00000262570 CDCA7LQ96GN5 454 aa21.6■■□□□ 1.05
CHCHD3-201ENST00000262570 MYH16Q9H6N6 1097 aa21.6■■□□□ 1.05
CHCHD3-201ENST00000262570 FANCIQ9NVI1 1328 aa21.59■■□□□ 1.05
CHCHD3-201ENST00000262570 ZNF831Q5JPB2 1677 aa21.59■■□□□ 1.05
CHCHD3-201ENST00000262570 GIGYF1O75420 1035 aaPredicted RBP21.58■■□□□ 1.05
CHCHD3-201ENST00000262570 SNRPA1P09661 255 aaKnown RBP21.58■■□□□ 1.05
CHCHD3-201ENST00000262570 KRT24Q2M2I5 525 aa21.57■■□□□ 1.04
CHCHD3-201ENST00000262570 DNAJC10Q8IXB1 793 aa21.57■■□□□ 1.04
CHCHD3-201ENST00000262570 TRMT2AQ8IZ69 625 aaKnown RBP21.57■■□□□ 1.04
CHCHD3-201ENST00000262570 TEX13AQ9BXU3 409 aaPredicted RBP21.57■■□□□ 1.04
CHCHD3-201ENST00000262570 PRAMEF22A3QJZ6 481 aa21.57■■□□□ 1.04
CHCHD3-201ENST00000262570 HMGB2P26583 209 aaKnown RBP21.57■■□□□ 1.04
CHCHD3-201ENST00000262570 LINC00116Q8NCU8 138 aa21.56■■□□□ 1.04
CHCHD3-201ENST00000262570 YTHDC1Q96MU7 727 aaKnown RBP21.56■■□□□ 1.04
CHCHD3-201ENST00000262570 C8orf58Q8NAV2 365 aa21.55■■□□□ 1.04
CHCHD3-201ENST00000262570 USP16Q9Y5T5 823 aa21.55■■□□□ 1.04
CHCHD3-201ENST00000262570 RREB1Q92766 1687 aa21.55■■□□□ 1.04
CHCHD3-201ENST00000262570 CICQ96RK0 1608 aaPredicted RBP21.54■■□□□ 1.04
CHCHD3-201ENST00000262570 CYP19A1P11511 503 aaPredicted RBP21.53■■□□□ 1.04
CHCHD3-201ENST00000262570 DUSP27Q5VZP5 1158 aa21.53■■□□□ 1.04
CHCHD3-201ENST00000262570 TJP1Q07157 1748 aa21.53■■□□□ 1.04
CHCHD3-201ENST00000262570 STARD3NLO95772 234 aa21.53■■□□□ 1.04
CHCHD3-201ENST00000262570 HOXB7P09629 217 aa21.53■■□□□ 1.04
CHCHD3-201ENST00000262570 EXOSC9Q06265 439 aaKnown RBP21.52■■□□□ 1.04
CHCHD3-201ENST00000262570 RC3H1Q5TC82 1133 aaKnown RBP21.52■■□□□ 1.04
CHCHD3-201ENST00000262570 TSPYL6Q8N831 410 aa21.52■■□□□ 1.04
CHCHD3-201ENST00000262570 ELL2O00472 640 aaPredicted RBP21.51■■□□□ 1.03
CHCHD3-201ENST00000262570 CRKLP46109 303 aaKnown RBP21.51■■□□□ 1.03
CHCHD3-201ENST00000262570 CNTNAP4Q9C0A0 1308 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms