Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
LSM1O15116 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM1O15116 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.25■□□□□ 0.51
LSM1O15116 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.25■□□□□ 0.51
LSM1O15116 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM1O15116 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM1O15116 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.24■□□□□ 0.51
LSM1O15116 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 AC233263.1-201ENST00000578059 224 ntBASIC18.24■□□□□ 0.51
LSM1O15116 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.24■□□□□ 0.51
LSM1O15116 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.24■□□□□ 0.51
LSM1O15116 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.24■□□□□ 0.51
LSM1O15116 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM1O15116 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.23■□□□□ 0.51
LSM1O15116 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LSM1O15116 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LSM1O15116 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LSM1O15116 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 KRT17P3-201ENST00000420566 1262 ntBASIC18.23■□□□□ 0.51
LSM1O15116 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.23■□□□□ 0.51
LSM1O15116 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.23■□□□□ 0.51
LSM1O15116 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.23■□□□□ 0.51
LSM1O15116 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 AC026366.1-201ENST00000488803 879 ntBASIC18.23■□□□□ 0.51
LSM1O15116 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.23■□□□□ 0.51
LSM1O15116 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.23■□□□□ 0.51
LSM1O15116 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.23■□□□□ 0.51
LSM1O15116 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LSM1O15116 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LSM1O15116 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM1O15116 BICD1-207ENST00000551848 1962 ntBASIC18.22■□□□□ 0.51
LSM1O15116 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LSM1O15116 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 AL390961.4-201ENST00000623958 2535 ntBASIC18.22■□□□□ 0.51
LSM1O15116 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.22■□□□□ 0.51
LSM1O15116 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.22■□□□□ 0.51
LSM1O15116 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
LSM1O15116 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.22■□□□□ 0.51
LSM1O15116 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
LSM1O15116 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LSM1O15116 RNA5SP413-201ENST00000516373 109 ntBASIC18.22■□□□□ 0.51
LSM1O15116 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.22■□□□□ 0.51
LSM1O15116 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LSM1O15116 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LSM1O15116 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LSM1O15116 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM1O15116 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
LSM1O15116 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms