Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 AC090192.1-201ENST00000517740 490 ntBASIC18.31■□□□□ 0.52
LSM1O15116 AL160286.2-201ENST00000567150 934 ntBASIC18.31■□□□□ 0.52
LSM1O15116 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM1O15116 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LSM1O15116 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.31■□□□□ 0.52
LSM1O15116 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.31■□□□□ 0.52
LSM1O15116 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM1O15116 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM1O15116 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM1O15116 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.3■□□□□ 0.52
LSM1O15116 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LSM1O15116 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.3■□□□□ 0.52
LSM1O15116 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.3■□□□□ 0.52
LSM1O15116 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.3■□□□□ 0.52
LSM1O15116 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.3■□□□□ 0.52
LSM1O15116 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.3■□□□□ 0.52
LSM1O15116 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.3■□□□□ 0.52
LSM1O15116 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LSM1O15116 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
LSM1O15116 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.3■□□□□ 0.52
LSM1O15116 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM1O15116 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.3■□□□□ 0.52
LSM1O15116 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LSM1O15116 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LSM1O15116 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.3■□□□□ 0.52
LSM1O15116 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.29■□□□□ 0.52
LSM1O15116 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LSM1O15116 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.29■□□□□ 0.52
LSM1O15116 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.29■□□□□ 0.52
LSM1O15116 TSPY23P-201ENST00000440136 739 ntBASIC18.29■□□□□ 0.52
LSM1O15116 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.29■□□□□ 0.52
LSM1O15116 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.29■□□□□ 0.52
LSM1O15116 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LSM1O15116 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 AC020916.1-201ENST00000587762 1774 ntBASIC18.29■□□□□ 0.52
LSM1O15116 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LSM1O15116 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM1O15116 ANO7L1-203ENST00000602586 1720 ntBASIC18.29■□□□□ 0.52
LSM1O15116 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.29■□□□□ 0.52
LSM1O15116 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.28■□□□□ 0.52
LSM1O15116 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.28■□□□□ 0.52
LSM1O15116 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 AC007613.1-201ENST00000572811 2597 ntBASIC18.28■□□□□ 0.52
LSM1O15116 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 AL355802.2-201ENST00000402069 882 ntBASIC18.28■□□□□ 0.52
LSM1O15116 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.28■□□□□ 0.52
LSM1O15116 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.28■□□□□ 0.52
LSM1O15116 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM1O15116 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LSM1O15116 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms