Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 TSPY21P-201ENST00000433481 731 ntBASIC20.86■□□□□ 0.93
COPB1P53618 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.86■□□□□ 0.93
COPB1P53618 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COPB1P53618 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
COPB1P53618 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPB1P53618 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COPB1P53618 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPB1P53618 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COPB1P53618 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.86■□□□□ 0.93
COPB1P53618 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COPB1P53618 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPB1P53618 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.85■□□□□ 0.93
COPB1P53618 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
COPB1P53618 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
COPB1P53618 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.85■□□□□ 0.93
COPB1P53618 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.85■□□□□ 0.93
COPB1P53618 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.85■□□□□ 0.93
COPB1P53618 TSPY23P-201ENST00000440136 739 ntBASIC20.85■□□□□ 0.93
COPB1P53618 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.85■□□□□ 0.93
COPB1P53618 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 AL160286.2-201ENST00000567150 934 ntBASIC20.85■□□□□ 0.93
COPB1P53618 AC142086.2-201ENST00000569753 217 ntBASIC20.85■□□□□ 0.93
COPB1P53618 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.85■□□□□ 0.93
COPB1P53618 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.85■□□□□ 0.93
COPB1P53618 AC079598.2-202ENST00000546624 1451 ntBASIC20.85■□□□□ 0.93
COPB1P53618 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.85■□□□□ 0.93
COPB1P53618 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.85■□□□□ 0.93
COPB1P53618 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.85■□□□□ 0.93
COPB1P53618 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
COPB1P53618 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COPB1P53618 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 BICD1-207ENST00000551848 1962 ntBASIC20.85■□□□□ 0.93
COPB1P53618 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COPB1P53618 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.85■□□□□ 0.93
COPB1P53618 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.84■□□□□ 0.93
COPB1P53618 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.84■□□□□ 0.93
COPB1P53618 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.84■□□□□ 0.93
COPB1P53618 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.84■□□□□ 0.93
COPB1P53618 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
COPB1P53618 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.84■□□□□ 0.93
COPB1P53618 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
COPB1P53618 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.84■□□□□ 0.93
COPB1P53618 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.84■□□□□ 0.93
COPB1P53618 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 C1QL1P1-201ENST00000568105 661 ntBASIC20.84■□□□□ 0.93
COPB1P53618 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.84■□□□□ 0.93
COPB1P53618 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
COPB1P53618 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COPB1P53618 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.84■□□□□ 0.93
COPB1P53618 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
COPB1P53618 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
COPB1P53618 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COPB1P53618 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COPB1P53618 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COPB1P53618 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COPB1P53618 NBPF21P-201ENST00000425093 1451 ntBASIC20.83■□□□□ 0.93
COPB1P53618 AC020763.4-201ENST00000623414 4170 ntBASIC20.83■□□□□ 0.93
COPB1P53618 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COPB1P53618 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COPB1P53618 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.83■□□□□ 0.93
COPB1P53618 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.83■□□□□ 0.93
COPB1P53618 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.83■□□□□ 0.93
COPB1P53618 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.83■□□□□ 0.93
COPB1P53618 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.83■□□□□ 0.93
COPB1P53618 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.83■□□□□ 0.93
COPB1P53618 AC104771.1-201ENST00000603335 964 ntBASIC20.83■□□□□ 0.93
COPB1P53618 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.83■□□□□ 0.93
COPB1P53618 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COPB1P53618 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.83■□□□□ 0.92
COPB1P53618 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COPB1P53618 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
COPB1P53618 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
COPB1P53618 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
COPB1P53618 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.83■□□□□ 0.92
COPB1P53618 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms