Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.35■■□□□ 1.33
CPSF4LA6NMK7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
CPSF4LA6NMK7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 AC135983.2-203ENST00000454486 1613 ntBASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CPSF4LA6NMK7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.33■■□□□ 1.33
CPSF4LA6NMK7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CPSF4LA6NMK7 AP002414.2-202ENST00000590929 1450 ntBASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 WHAMMP2-203ENST00000563942 1603 ntBASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 MIR3665-201ENST00000578708 105 ntBASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.3■■□□□ 1.32
CPSF4LA6NMK7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CPSF4LA6NMK7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.3■■□□□ 1.32
CPSF4LA6NMK7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CPSF4LA6NMK7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 LINC00273-201ENST00000539813 1452 ntBASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 AP006261.1-201ENST00000584783 668 ntBASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CPSF4LA6NMK7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4LA6NMK7 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CPSF4LA6NMK7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.21■■□□□ 1.31
CPSF4LA6NMK7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4LA6NMK7 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4LA6NMK7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4LA6NMK7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.19■■□□□ 1.3
CPSF4LA6NMK7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4LA6NMK7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CPSF4LA6NMK7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.18■■□□□ 1.3
CPSF4LA6NMK7 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.18■■□□□ 1.3
CPSF4LA6NMK7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 AC087741.3-201ENST00000624270 1347 ntBASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 AL162393.1-201ENST00000437852 946 ntBASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 AC018358.1-201ENST00000631079 1402 ntBASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.14■■□□□ 1.3
CPSF4LA6NMK7 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.14■■□□□ 1.29
CPSF4LA6NMK7 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CPSF4LA6NMK7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms