Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC083880.1-201ENST00000608266 535 ntBASIC18.55■□□□□ 0.56
LSM1O15116 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.55■□□□□ 0.56
LSM1O15116 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.55■□□□□ 0.56
LSM1O15116 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LSM1O15116 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
LSM1O15116 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.54■□□□□ 0.56
LSM1O15116 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.54■□□□□ 0.56
LSM1O15116 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LSM1O15116 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
LSM1O15116 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.54■□□□□ 0.56
LSM1O15116 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.54■□□□□ 0.56
LSM1O15116 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.54■□□□□ 0.56
LSM1O15116 KRT18P16-201ENST00000510337 1294 ntBASIC18.54■□□□□ 0.56
LSM1O15116 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.54■□□□□ 0.56
LSM1O15116 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 AC120498.8-201ENST00000614275 531 ntBASIC18.54■□□□□ 0.56
LSM1O15116 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.54■□□□□ 0.56
LSM1O15116 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.54■□□□□ 0.56
LSM1O15116 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.54■□□□□ 0.56
LSM1O15116 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
LSM1O15116 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LSM1O15116 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.54■□□□□ 0.56
LSM1O15116 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LSM1O15116 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LSM1O15116 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
LSM1O15116 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.53■□□□□ 0.56
LSM1O15116 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
LSM1O15116 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.53■□□□□ 0.56
LSM1O15116 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
LSM1O15116 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
LSM1O15116 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.53■□□□□ 0.56
LSM1O15116 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.53■□□□□ 0.56
LSM1O15116 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 FP475955.4-201ENST00000623131 1990 ntBASIC18.53■□□□□ 0.56
LSM1O15116 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LSM1O15116 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LSM1O15116 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.52■□□□□ 0.56
LSM1O15116 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
LSM1O15116 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LSM1O15116 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.52■□□□□ 0.56
LSM1O15116 AL138781.1-201ENST00000566567 1274 ntBASIC18.52■□□□□ 0.56
LSM1O15116 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.52■□□□□ 0.56
LSM1O15116 AL121829.2-201ENST00000620908 328 ntBASIC18.52■□□□□ 0.56
LSM1O15116 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.52■□□□□ 0.56
LSM1O15116 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LSM1O15116 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
LSM1O15116 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LSM1O15116 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LSM1O15116 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LSM1O15116 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LSM1O15116 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms