RNA–Protein interactions for RNA: ENST00000310546.2

SPSB4-201, Transcript of splA/ryanodine receptor domain and SOCS box containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPSB4, Length 2,908 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB4-201ENST00000310546 NISCHQ9Y2I1 1504 aa36.14■■■■□ 3.38
SPSB4-201ENST00000310546 CCDC180Q9P1Z9 1646 aa31.49■■■□□ 2.63
SPSB4-201ENST00000310546 DCAF8L2P0C7V8 631 aa30.88■■■□□ 2.53
SPSB4-201ENST00000310546 SHROOM4Q9ULL8 1493 aa30.62■■■□□ 2.49
SPSB4-201ENST00000310546 HRCP23327 699 aa30.51■■■□□ 2.47
SPSB4-201ENST00000310546 ZCCHC6Q5VYS8 1495 aaKnown RBP30.44■■■□□ 2.46
SPSB4-201ENST00000310546 ABCC9O60706 1549 aa30.3■■■□□ 2.44
SPSB4-201ENST00000310546 PPARGC1BQ86YN6 1023 aaKnown RBP30■■■□□ 2.39
SPSB4-201ENST00000310546 PCGF6Q9BYE7 350 aa29.95■■■□□ 2.38
SPSB4-201ENST00000310546 SUPT5HO00267 1087 aaKnown RBP29.92■■■□□ 2.38
SPSB4-201ENST00000310546 DCAF1Q9Y4B6 1507 aa29.69■■■□□ 2.34
SPSB4-201ENST00000310546 PELP1Q8IZL8 1130 aaKnown RBP29.63■■■□□ 2.33
SPSB4-201ENST00000310546 MYO15BQ96JP2 1530 aa29.53■■■□□ 2.32
SPSB4-201ENST00000310546 NACADO15069 1562 aa29.44■■■□□ 2.3
SPSB4-201ENST00000310546 CHIC1Q5VXU3 224 aa29.35■■■□□ 2.29
SPSB4-201ENST00000310546 RB1CC1Q8TDY2 1594 aa29.33■■■□□ 2.29
SPSB4-201ENST00000310546 SCAF1Q9H7N4 1312 aaKnown RBP29■■■□□ 2.23
SPSB4-201ENST00000310546 SCRIBQ14160 1630 aa28.98■■■□□ 2.23
SPSB4-201ENST00000310546 LOC105371045A0A1W2PR82 267 aa28.81■■■□□ 2.2
SPSB4-201ENST00000310546 TRIM26Q12899 539 aaPredicted RBP28.8■■■□□ 2.2
SPSB4-201ENST00000310546 UNC13AQ9UPW8 1703 aa28.8■■■□□ 2.2
SPSB4-201ENST00000310546 ZEB1P37275 1124 aaPredicted RBP28.58■■■□□ 2.17
SPSB4-201ENST00000310546 PABPN1Q86U42 306 aaKnown RBP eCLIP28.54■■■□□ 2.16
SPSB4-201ENST00000310546 BICRAQ9NZM4 1560 aa28.5■■■□□ 2.15
SPSB4-201ENST00000310546 MYT1Q01538 1121 aa28.49■■■□□ 2.15
SPSB4-201ENST00000310546 RSF1Q96T23 1441 aaPredicted RBP28.31■■■□□ 2.12
SPSB4-201ENST00000310546 CECR2Q9BXF3 1484 aa28.28■■■□□ 2.12
SPSB4-201ENST00000310546 ACIN1Q9UKV3 1341 aaKnown RBP28.22■■■□□ 2.11
SPSB4-201ENST00000310546 NEUROD1Q13562 356 aa28.18■■■□□ 2.1
SPSB4-201ENST00000310546 GTF3C3Q9Y5Q9 886 aa28.08■■■□□ 2.09
SPSB4-201ENST00000310546 MROH2BQ7Z745 1585 aa28.05■■■□□ 2.08
SPSB4-201ENST00000310546 WIZO95785 1651 aa27.88■■■□□ 2.05
SPSB4-201ENST00000310546 CENPBP07199 599 aaPredicted RBP27.87■■■□□ 2.05
SPSB4-201ENST00000310546 BAZ1AQ9NRL2 1556 aaPredicted RBP27.82■■■□□ 2.04
SPSB4-201ENST00000310546 EHMT2Q96KQ7 1210 aa27.82■■■□□ 2.04
SPSB4-201ENST00000310546 FAM9AQ8IZU1 332 aaPredicted RBP27.71■■■□□ 2.03
SPSB4-201ENST00000310546 DIEXFQ68CQ4 756 aaKnown RBP27.7■■■□□ 2.03
SPSB4-201ENST00000310546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.68■■■□□ 2.02
SPSB4-201ENST00000310546 SMARCA4P51532 1647 aa27.68■■■□□ 2.02
SPSB4-201ENST00000310546 EIF4G1Q04637 1599 aaKnown RBP27.67■■■□□ 2.02
SPSB4-201ENST00000310546 CCER1Q8TC90 406 aaPredicted RBP27.63■■■□□ 2.01
SPSB4-201ENST00000310546 TRIM41Q8WV44 630 aa27.57■■■□□ 2
SPSB4-201ENST00000310546 TOP2AP11388 1531 aaKnown RBP27.43■■□□□ 1.98
SPSB4-201ENST00000310546 CC2D2AQ9P2K1 1620 aa27.42■■□□□ 1.98
SPSB4-201ENST00000310546 YTHDC1Q96MU7 727 aaKnown RBP27.4■■□□□ 1.98
SPSB4-201ENST00000310546 PEG3Q9GZU2 1588 aa27.33■■□□□ 1.97
SPSB4-201ENST00000310546 ATAD2BQ9ULI0 1458 aa27.33■■□□□ 1.97
SPSB4-201ENST00000310546 CCDC88BA6NC98 1476 aa27.28■■□□□ 1.96
SPSB4-201ENST00000310546 SMARCA2P51531 1590 aa27.28■■□□□ 1.96
SPSB4-201ENST00000310546 DNAJC5BQ9UF47 199 aa27.27■■□□□ 1.96
SPSB4-201ENST00000310546 NCAPD3P42695 1498 aa27.18■■□□□ 1.94
SPSB4-201ENST00000310546 BAZ1BQ9UIG0 1483 aaKnown RBP27.13■■□□□ 1.93
SPSB4-201ENST00000310546 HMGXB3Q12766 1538 aa27.1■■□□□ 1.93
SPSB4-201ENST00000310546 TTBK1Q5TCY1 1321 aaPredicted RBP27.08■■□□□ 1.93
SPSB4-201ENST00000310546 ZNF316A6NFI3 1004 aaPredicted RBP27.06■■□□□ 1.92
SPSB4-201ENST00000310546 ABCC8Q09428 1581 aa26.99■■□□□ 1.91
SPSB4-201ENST00000310546 MIER1Q8N108 512 aa26.97■■□□□ 1.91
SPSB4-201ENST00000310546 BCL11AQ9H165 835 aa26.78■■□□□ 1.88
SPSB4-201ENST00000310546 ANP32EQ9BTT0 268 aa26.69■■□□□ 1.86
SPSB4-201ENST00000310546 SUPT16HQ9Y5B9 1047 aaKnown RBP26.62■■□□□ 1.85
SPSB4-201ENST00000310546 WRNQ14191 1432 aaPredicted RBP eCLIP26.62■■□□□ 1.85
SPSB4-201ENST00000310546 SOGA1O94964 1423 aa26.59■■□□□ 1.85
SPSB4-201ENST00000310546 TSHZ2Q9NRE2 1034 aa26.54■■□□□ 1.84
SPSB4-201ENST00000310546 RANGAP1P46060 587 aaPredicted RBP26.53■■□□□ 1.84
SPSB4-201ENST00000310546 SYNJ1O43426 1573 aa26.53■■□□□ 1.84
SPSB4-201ENST00000310546 RUSC2Q8N2Y8 1516 aa26.52■■□□□ 1.84
SPSB4-201ENST00000310546 CSRNP3Q8WYN3 585 aa26.45■■□□□ 1.82
SPSB4-201ENST00000310546 NESP48681 1621 aa26.44■■□□□ 1.82
SPSB4-201ENST00000310546 CADPSQ9ULU8 1353 aa26.44■■□□□ 1.82
SPSB4-201ENST00000310546 CFTRP13569 1480 aa26.43■■□□□ 1.82
SPSB4-201ENST00000310546 CLSPNQ9HAW4 1339 aa26.41■■□□□ 1.82
SPSB4-201ENST00000310546 HNRNPUL2Q1KMD3 747 aaKnown RBP26.4■■□□□ 1.82
SPSB4-201ENST00000310546 UBTFP17480 764 aaKnown RBP26.39■■□□□ 1.82
SPSB4-201ENST00000310546 CEP162Q5TB80 1403 aa26.35■■□□□ 1.81
SPSB4-201ENST00000310546 LAMC3Q9Y6N6 1575 aa26.35■■□□□ 1.81
SPSB4-201ENST00000310546 EEA1Q15075 1411 aa26.34■■□□□ 1.81
SPSB4-201ENST00000310546 PRDM2Q13029 1718 aa26.29■■□□□ 1.8
SPSB4-201ENST00000310546 TOP2BQ02880 1626 aa26.28■■□□□ 1.8
SPSB4-201ENST00000310546 BIVM-ERCC5R4GMW8 1640 aa26.21■■□□□ 1.79
SPSB4-201ENST00000310546 BCANQ96GW7 911 aa26.18■■□□□ 1.78
SPSB4-201ENST00000310546 CUX1P39880 1505 aa26.16■■□□□ 1.78
SPSB4-201ENST00000310546 FANCD2Q9BXW9 1451 aa26.16■■□□□ 1.78
SPSB4-201ENST00000310546 TNIKQ9UKE5 1360 aa26.14■■□□□ 1.78
SPSB4-201ENST00000310546 PDS5BQ9NTI5 1447 aa26.14■■□□□ 1.77
SPSB4-201ENST00000310546 KIF21AQ7Z4S6 1674 aa26.13■■□□□ 1.77
SPSB4-201ENST00000310546 GOLGA3Q08378 1498 aa26.13■■□□□ 1.77
SPSB4-201ENST00000310546 CEP164Q9UPV0 1460 aa26.06■■□□□ 1.76
SPSB4-201ENST00000310546 KIF21BO75037 1637 aa26.04■■□□□ 1.76
SPSB4-201ENST00000310546 ERCC6Q03468 1493 aa26.01■■□□□ 1.75
SPSB4-201ENST00000310546 RAPGEF2Q9Y4G8 1499 aa25.98■■□□□ 1.75
SPSB4-201ENST00000310546 FKBP8Q14318 412 aa25.95■■□□□ 1.74
SPSB4-201ENST00000310546 RBM19Q9Y4C8 960 aaKnown RBP25.94■■□□□ 1.74
SPSB4-201ENST00000310546 KCNH8Q96L42 1107 aa25.92■■□□□ 1.74
SPSB4-201ENST00000310546 URB2Q14146 1524 aaKnown RBP25.89■■□□□ 1.74
SPSB4-201ENST00000310546 MRC2Q9UBG0 1479 aa25.86■■□□□ 1.73
SPSB4-201ENST00000310546 KIF27Q86VH2 1401 aa25.86■■□□□ 1.73
SPSB4-201ENST00000310546 THOC2Q8NI27 1593 aaKnown RBP25.84■■□□□ 1.73
SPSB4-201ENST00000310546 TOPBP1Q92547 1522 aa25.82■■□□□ 1.72
SPSB4-201ENST00000310546 DNMBPQ6XZF7 1577 aa25.82■■□□□ 1.72
SPSB4-201ENST00000310546 APLP2Q06481 763 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms