Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.09■□□□□ 0.97
COPB1P53618 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.09■□□□□ 0.97
COPB1P53618 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COPB1P53618 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.09■□□□□ 0.97
COPB1P53618 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.09■□□□□ 0.97
COPB1P53618 AC097658.1-201ENST00000475555 843 ntBASIC21.09■□□□□ 0.97
COPB1P53618 KRT18P16-201ENST00000510337 1294 ntBASIC21.09■□□□□ 0.97
COPB1P53618 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.09■□□□□ 0.97
COPB1P53618 PNMA6B-201ENST00000538162 1200 ntBASIC21.09■□□□□ 0.97
COPB1P53618 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
COPB1P53618 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 AC093525.10-201ENST00000625130 1569 ntBASIC21.09■□□□□ 0.97
COPB1P53618 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COPB1P53618 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COPB1P53618 AC104581.1-202ENST00000635932 2618 ntBASIC21.08■□□□□ 0.97
COPB1P53618 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.08■□□□□ 0.97
COPB1P53618 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.08■□□□□ 0.97
COPB1P53618 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
COPB1P53618 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
COPB1P53618 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
COPB1P53618 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
COPB1P53618 NCF1B-203ENST00000435988 1254 ntBASIC21.08■□□□□ 0.97
COPB1P53618 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
COPB1P53618 MIR4758-201ENST00000577688 71 ntBASIC21.08■□□□□ 0.97
COPB1P53618 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COPB1P53618 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.08■□□□□ 0.96
COPB1P53618 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
COPB1P53618 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COPB1P53618 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
COPB1P53618 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COPB1P53618 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COPB1P53618 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COPB1P53618 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
COPB1P53618 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 AC009113.1-201ENST00000570267 2443 ntBASIC21.07■□□□□ 0.96
COPB1P53618 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
COPB1P53618 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.07■□□□□ 0.96
COPB1P53618 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.07■□□□□ 0.96
COPB1P53618 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.07■□□□□ 0.96
COPB1P53618 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.07■□□□□ 0.96
COPB1P53618 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.07■□□□□ 0.96
COPB1P53618 AC060766.5-201ENST00000590539 871 ntBASIC21.07■□□□□ 0.96
COPB1P53618 AC120498.8-201ENST00000614275 531 ntBASIC21.07■□□□□ 0.96
COPB1P53618 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.07■□□□□ 0.96
COPB1P53618 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.07■□□□□ 0.96
COPB1P53618 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
COPB1P53618 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COPB1P53618 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.07■□□□□ 0.96
COPB1P53618 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.07■□□□□ 0.96
COPB1P53618 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COPB1P53618 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.06■□□□□ 0.96
COPB1P53618 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
COPB1P53618 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.06■□□□□ 0.96
COPB1P53618 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.06■□□□□ 0.96
COPB1P53618 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.06■□□□□ 0.96
COPB1P53618 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.06■□□□□ 0.96
COPB1P53618 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
COPB1P53618 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.06■□□□□ 0.96
COPB1P53618 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COPB1P53618 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
COPB1P53618 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms