Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.34■■□□□ 1.01
COPB1P53618 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.34■■□□□ 1.01
COPB1P53618 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.34■■□□□ 1.01
COPB1P53618 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.34■■□□□ 1.01
COPB1P53618 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.34■■□□□ 1.01
COPB1P53618 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COPB1P53618 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.34■■□□□ 1.01
COPB1P53618 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COPB1P53618 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COPB1P53618 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COPB1P53618 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COPB1P53618 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COPB1P53618 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.34■■□□□ 1.01
COPB1P53618 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.33■■□□□ 1.01
COPB1P53618 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.33■■□□□ 1.01
COPB1P53618 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
COPB1P53618 ZNF815P-204ENST00000434898 1737 ntBASIC21.33■■□□□ 1.01
COPB1P53618 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
COPB1P53618 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.33■■□□□ 1.01
COPB1P53618 AC073210.2-201ENST00000430369 194 ntBASIC21.33■■□□□ 1.01
COPB1P53618 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.33■■□□□ 1.01
COPB1P53618 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.33■■□□□ 1.01
COPB1P53618 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.33■■□□□ 1.01
COPB1P53618 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.33■■□□□ 1.01
COPB1P53618 AC005829.2-201ENST00000571422 1056 ntBASIC21.33■■□□□ 1.01
COPB1P53618 IKBKGP1-201ENST00000612193 1073 ntBASIC21.33■■□□□ 1.01
COPB1P53618 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
COPB1P53618 AC141586.3-201ENST00000562166 1838 ntBASIC21.33■■□□□ 1.01
COPB1P53618 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
COPB1P53618 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.33■■□□□ 1
COPB1P53618 CROCCP3-202ENST00000420820 1947 ntBASIC21.33■■□□□ 1
COPB1P53618 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.33■■□□□ 1
COPB1P53618 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.33■■□□□ 1
COPB1P53618 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1
COPB1P53618 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COPB1P53618 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1
COPB1P53618 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.33■■□□□ 1
COPB1P53618 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
COPB1P53618 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.32■■□□□ 1
COPB1P53618 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.32■■□□□ 1
COPB1P53618 AL390719.1-204ENST00000412397 1219 ntBASIC21.32■■□□□ 1
COPB1P53618 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.32■■□□□ 1
COPB1P53618 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.32■■□□□ 1
COPB1P53618 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.32■■□□□ 1
COPB1P53618 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
COPB1P53618 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
COPB1P53618 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
COPB1P53618 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COPB1P53618 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.31■■□□□ 1
COPB1P53618 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.31■■□□□ 1
COPB1P53618 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.31■■□□□ 1
COPB1P53618 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.31■■□□□ 1
COPB1P53618 MIR663A-201ENST00000385250 93 ntBASIC21.31■■□□□ 1
COPB1P53618 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.31■■□□□ 1
COPB1P53618 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
COPB1P53618 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
COPB1P53618 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COPB1P53618 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 AL138781.2-201ENST00000617896 1843 ntBASIC21.31■■□□□ 1
COPB1P53618 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
COPB1P53618 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COPB1P53618 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.3■■□□□ 1
COPB1P53618 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.3■■□□□ 1
COPB1P53618 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
COPB1P53618 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COPB1P53618 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.3■■□□□ 1
COPB1P53618 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COPB1P53618 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.3■■□□□ 1
COPB1P53618 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COPB1P53618 AC124283.5-201ENST00000624661 1809 ntBASIC21.3■■□□□ 1
COPB1P53618 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.3■■□□□ 1
COPB1P53618 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.3■■□□□ 1
COPB1P53618 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COPB1P53618 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms