Protein–RNA interactions for Protein: Q8NE71

ABCF1, ATP-binding cassette sub-family F member 1, humanhuman

Known RBP eCLIP

Length 845 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1Q8NE71 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.166e-7■□□□□ 8.6
ABCF1Q8NE71 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.941e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-230ENST00000576924 3314 ntTSL 1 (best)20.83■□□□□ 0.931e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC20.79■□□□□ 0.921e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-208ENST00000571378 2870 ntTSL 1 (best)19.01■□□□□ 0.631e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.421e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC16.32■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC16.27■□□□□ 0.21e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-224ENST00000575870 696 ntTSL 314.9□□□□□ -0.021e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-207ENST00000571372 462 ntTSL 313.16□□□□□ -0.31e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-203ENST00000570655 575 ntTSL 213.08□□□□□ -0.321e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-214ENST00000573451 441 ntTSL 311.8□□□□□ -0.521e-6■□□□□ 8.6
ABCF1Q8NE71 SRRM2-215ENST00000573498 994 ntTSL 39.78□□□□□ -0.841e-6■□□□□ 8.6
ABCF1Q8NE71 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC39.1■■■■□ 3.853e-7■□□□□ 8.5
ABCF1Q8NE71 INPPL1-209ENST00000540973 375 ntTSL 337.94■■■■□ 3.665e-6■□□□□ 8.5
ABCF1Q8NE71 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC36.11■■■■□ 3.375e-6■□□□□ 8.5
ABCF1Q8NE71 INPPL1-211ENST00000541544 530 ntTSL 235.46■■■■□ 3.275e-6■□□□□ 8.5
ABCF1Q8NE71 VASP-211ENST00000592139 424 ntTSL 334.26■■■■□ 3.083e-7■□□□□ 8.5
ABCF1Q8NE71 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC32.98■■■□□ 2.875e-6■□□□□ 8.5
ABCF1Q8NE71 INPPL1-214ENST00000543234 275 ntTSL 232.43■■■□□ 2.785e-6■□□□□ 8.5
ABCF1Q8NE71 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC30.96■■■□□ 2.555e-6■□□□□ 8.5
ABCF1Q8NE71 VASP-202ENST00000586014 1725 ntTSL 527.79■■■□□ 2.043e-7■□□□□ 8.5
ABCF1Q8NE71 PIEZO1-206ENST00000474606 544 ntTSL 427.36■■□□□ 1.975e-6■□□□□ 8.5
ABCF1Q8NE71 PIEZO1-215ENST00000566414 564 ntTSL 426.67■■□□□ 1.865e-6■□□□□ 8.5
ABCF1Q8NE71 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.75e-6■□□□□ 8.5
ABCF1Q8NE71 WDR26-208ENST00000486652 2867 ntTSL 1 (best)23.64■■□□□ 1.385e-6■□□□□ 8.5
ABCF1Q8NE71 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.053e-7■□□□□ 8.5
ABCF1Q8NE71 VASP-207ENST00000588482 804 ntTSL 517.34■□□□□ 0.373e-7■□□□□ 8.5
ABCF1Q8NE71 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.075e-6■□□□□ 8.5
ABCF1Q8NE71 WDR26-202ENST00000443112 1306 ntTSL 1 (best)10.58□□□□□ -0.725e-6■□□□□ 8.5
ABCF1Q8NE71 WDR26-203ENST00000445239 784 ntTSL 58.74□□□□□ -1.015e-6■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-233ENST00000475721 1271 ntTSL 230.06■■■□□ 2.41e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-230ENST00000460829 1804 ntTSL 227.32■■□□□ 1.961e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC20.23■□□□□ 0.831e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC19.71■□□□□ 0.751e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.44■□□□□ 0.71e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.71e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC19.33■□□□□ 0.681e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC19.05■□□□□ 0.641e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.471e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC17.81■□□□□ 0.441e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-222ENST00000442406 5129 ntTSL 1 (best)17.75■□□□□ 0.431e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.27■□□□□ 0.361e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC16.99■□□□□ 0.311e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC16.9■□□□□ 0.31e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC16.23■□□□□ 0.191e-9■□□□□ 8.5
ABCF1Q8NE71 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC14.6□□□□□ -0.071e-9■□□□□ 8.5
ABCF1Q8NE71 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.781e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-206ENST00000603967 656 ntTSL 325.88■■□□□ 1.731e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-210ENST00000604694 891 ntTSL 525.88■■□□□ 1.731e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.511e-10■□□□□ 8.4
ABCF1Q8NE71 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.081e-10■□□□□ 8.4
ABCF1Q8NE71 EGFL7-206ENST00000492002 654 ntTSL 535.55■■■■□ 3.285e-6■□□□□ 8.4
ABCF1Q8NE71 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.415e-6■□□□□ 8.4
ABCF1Q8NE71 FBL-210ENST00000599159 1400 ntTSL 1 (best)33.4■■■□□ 2.943e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-203ENST00000594309 603 ntTSL 232.95■■■□□ 2.873e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-211ENST00000601274 877 ntTSL 532.95■■■□□ 2.873e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-209ENST00000599134 500 ntTSL 531.55■■■□□ 2.643e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.353e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-208ENST00000598417 581 ntTSL 528.43■■■□□ 2.143e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-207ENST00000597634 726 ntTSL 523.06■■□□□ 1.283e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-204ENST00000594443 805 ntTSL 319.83■□□□□ 0.773e-14■□□□□ 8.3
ABCF1Q8NE71 FBL-206ENST00000597224 732 ntTSL 312.49□□□□□ -0.413e-14■□□□□ 8.3
ABCF1Q8NE71 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC22.49■■□□□ 1.193e-6■□□□□ 8.2
ABCF1Q8NE71 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.133e-6■□□□□ 8.2
ABCF1Q8NE71 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.693e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.423e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-213ENST00000583013 742 ntTSL 312.05□□□□□ -0.483e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-211ENST00000582097 2347 ntTSL 211.78□□□□□ -0.523e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC11.01□□□□□ -0.653e-6■□□□□ 8.2
ABCF1Q8NE71 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC8.99□□□□□ -0.973e-6■□□□□ 8.2
ABCF1Q8NE71 NCL-202ENST00000356936 890 ntTSL 325.73■■□□□ 1.712e-60■□□□□ 8.1
ABCF1Q8NE71 NCL-208ENST00000466274 671 ntTSL 29.33□□□□□ -0.922e-60■□□□□ 8.1
ABCF1Q8NE71 SNORD20-201ENST00000384550 80 ntBASIC1.05□□□□□ -2.242e-60■□□□□ 8.1
ABCF1Q8NE71 SCARNA2-201ENST00000458748 420 ntBASIC26.28■■□□□ 1.81e-323■□□□□ 8.1
ABCF1Q8NE71 AL356488.2-201ENST00000602755 427 ntBASIC26.01■■□□□ 1.751e-323■□□□□ 8.1
ABCF1Q8NE71 EIF4A2-208ENST00000445596 600 ntTSL 220.01■□□□□ 0.798e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-215ENST00000467585 570 ntTSL 219.08■□□□□ 0.648e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-227ENST00000498746 579 ntTSL 217.3■□□□□ 0.368e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-201ENST00000323963 1919 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.218e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-207ENST00000443963 1729 ntTSL 1 (best)9.93□□□□□ -0.828e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-218ENST00000475653 909 ntTSL 29.87□□□□□ -0.838e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-204ENST00000429589 1005 ntTSL 59.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-210ENST00000465032 578 ntTSL 29.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-212ENST00000465267 1054 ntTSL 29.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-224ENST00000495049 576 ntTSL 29.63□□□□□ -0.878e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-211ENST00000465222 676 ntTSL 29.52□□□□□ -0.898e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-203ENST00000426808 1751 ntTSL 1 (best)9.42□□□□□ -0.98e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-221ENST00000491473 579 ntTSL 28.71□□□□□ -1.028e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC8.67□□□□□ -1.028e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-202ENST00000425053 1977 ntTSL 57.44□□□□□ -1.228e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-219ENST00000485101 5327 ntTSL 55.23□□□□□ -1.578e-20■□□□□ 8
ABCF1Q8NE71 EIF4A2-220ENST00000486805 590 ntTSL 24.95□□□□□ -1.628e-20■□□□□ 8
ABCF1Q8NE71 SNORD2-201ENST00000459163 69 ntBASIC-0.08□□□□□ -2.428e-20■□□□□ 8
ABCF1Q8NE71 LTBP4-227ENST00000600026 723 ntTSL 331.92■■■□□ 2.79e-7■□□□□ 8
ABCF1Q8NE71 LTBP4-224ENST00000599016 726 ntTSL 331.33■■■□□ 2.619e-7■□□□□ 8
ABCF1Q8NE71 LMNA-225ENST00000515824 393 ntTSL 228.83■■■□□ 2.215e-9■□□□□ 8
ABCF1Q8NE71 LMNA-223ENST00000515459 757 ntTSL 524.39■■□□□ 1.495e-9■□□□□ 8
Retrieved 100 of 811 protein–RNA pairs in 185.5 ms