Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COPB1P53618 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.76■■□□□ 1.07
COPB1P53618 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.75■■□□□ 1.07
COPB1P53618 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COPB1P53618 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COPB1P53618 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
COPB1P53618 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.75■■□□□ 1.07
COPB1P53618 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.75■■□□□ 1.07
COPB1P53618 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.75■■□□□ 1.07
COPB1P53618 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COPB1P53618 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COPB1P53618 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
COPB1P53618 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.74■■□□□ 1.07
COPB1P53618 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.74■■□□□ 1.07
COPB1P53618 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COPB1P53618 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COPB1P53618 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COPB1P53618 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COPB1P53618 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COPB1P53618 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.74■■□□□ 1.07
COPB1P53618 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COPB1P53618 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COPB1P53618 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COPB1P53618 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COPB1P53618 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 AL355472.2-201ENST00000422958 438 ntBASIC21.73■■□□□ 1.07
COPB1P53618 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.73■■□□□ 1.07
COPB1P53618 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.73■■□□□ 1.07
COPB1P53618 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
COPB1P53618 CYP2T3P-201ENST00000601990 817 ntBASIC21.73■■□□□ 1.07
COPB1P53618 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COPB1P53618 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COPB1P53618 AP001271.2-201ENST00000624018 1556 ntBASIC21.73■■□□□ 1.07
COPB1P53618 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.73■■□□□ 1.07
COPB1P53618 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.73■■□□□ 1.07
COPB1P53618 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COPB1P53618 Z82202.1-201ENST00000623446 1880 ntBASIC21.73■■□□□ 1.07
COPB1P53618 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
COPB1P53618 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.72■■□□□ 1.07
COPB1P53618 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.72■■□□□ 1.07
COPB1P53618 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
COPB1P53618 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
COPB1P53618 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COPB1P53618 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
COPB1P53618 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.71■■□□□ 1.07
COPB1P53618 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.71■■□□□ 1.07
COPB1P53618 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
COPB1P53618 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 AC016769.1-201ENST00000409132 1010 ntBASIC21.71■■□□□ 1.07
COPB1P53618 CYP2T1P-201ENST00000432607 1285 ntBASIC21.71■■□□□ 1.07
COPB1P53618 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.71■■□□□ 1.07
COPB1P53618 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COPB1P53618 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COPB1P53618 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms