Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 AC100791.3-201ENST00000617619 330 ntBASIC19.22■□□□□ 0.67
LSM1O15116 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.22■□□□□ 0.67
LSM1O15116 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LSM1O15116 LETM1P2-201ENST00000597330 2178 ntBASIC19.22■□□□□ 0.67
LSM1O15116 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
LSM1O15116 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LSM1O15116 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.21■□□□□ 0.67
LSM1O15116 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM1O15116 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 MCRIP2P1-201ENST00000394346 511 ntBASIC19.21■□□□□ 0.67
LSM1O15116 KRT18P5-201ENST00000436075 1291 ntBASIC19.21■□□□□ 0.67
LSM1O15116 CNN2P6-201ENST00000439038 900 ntBASIC19.21■□□□□ 0.67
LSM1O15116 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LSM1O15116 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM1O15116 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.21■□□□□ 0.67
LSM1O15116 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.21■□□□□ 0.67
LSM1O15116 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LSM1O15116 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LSM1O15116 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LSM1O15116 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM1O15116 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
LSM1O15116 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.2■□□□□ 0.66
LSM1O15116 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LSM1O15116 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
LSM1O15116 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LSM1O15116 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LSM1O15116 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LSM1O15116 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.2■□□□□ 0.66
LSM1O15116 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.2■□□□□ 0.66
LSM1O15116 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.2■□□□□ 0.66
LSM1O15116 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
LSM1O15116 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.2■□□□□ 0.66
LSM1O15116 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM1O15116 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.19■□□□□ 0.66
LSM1O15116 AC068338.2-201ENST00000563278 1430 ntBASIC19.19■□□□□ 0.66
LSM1O15116 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.19■□□□□ 0.66
LSM1O15116 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM1O15116 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 DUX4L16-201ENST00000555130 1264 ntBASIC19.19■□□□□ 0.66
LSM1O15116 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.19■□□□□ 0.66
LSM1O15116 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LSM1O15116 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM1O15116 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM1O15116 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM1O15116 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM1O15116 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LSM1O15116 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LSM1O15116 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LSM1O15116 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.18■□□□□ 0.66
LSM1O15116 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.18■□□□□ 0.66
LSM1O15116 KRT8P17-201ENST00000453110 1448 ntBASIC19.18■□□□□ 0.66
LSM1O15116 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM1O15116 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM1O15116 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.18■□□□□ 0.66
LSM1O15116 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.18■□□□□ 0.66
LSM1O15116 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM1O15116 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.18■□□□□ 0.66
LSM1O15116 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LSM1O15116 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
LSM1O15116 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.18■□□□□ 0.66
LSM1O15116 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM1O15116 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms