Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.282e-7■■■■■ 40
LSM11P83369 FSBP-202ENST00000517506 2472 ntTSL 54.6□□□□□ -1.672e-7■■■■■ 40
LSM11P83369 RPS10-NUDT3-202ENST00000639725 4782 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.931e-6■■■■■ 39.8
LSM11P83369 RPS10-NUDT3-203ENST00000639877 2911 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.961e-6■■■■■ 39.8
LSM11P83369 RPS10-NUDT3-201ENST00000605528 595 ntTSL 55.89□□□□□ -1.471e-6■■■■■ 39.8
LSM11P83369 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC11.39□□□□□ -0.593e-25■■■■■ 39.8
LSM11P83369 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.012e-10■■■■■ 39.7
LSM11P83369 C1QBP-202ENST00000570805 688 ntTSL 310.43□□□□□ -0.742e-10■■■■■ 39.7
LSM11P83369 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.59■□□□□ 0.413e-8■■■■■ 39.5
LSM11P83369 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.293e-17■■■■■ 39.5
LSM11P83369 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.433e-8■■■■■ 39.5
LSM11P83369 STEAP1B-202ENST00000406890 1193 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.473e-17■■■■■ 39.5
LSM11P83369 HIPK1-206ENST00000369559 3424 ntTSL 1 (best) BASIC9.46□□□□□ -0.93e-8■■■■■ 39.5
LSM11P83369 HIPK1-208ENST00000426820 4112 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.253e-8■■■■■ 39.5
LSM11P83369 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC6.66□□□□□ -1.343e-8■■■■■ 39.5
LSM11P83369 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.51□□□□□ -1.533e-8■■■■■ 39.5
LSM11P83369 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.64e-6■■■■■ 39.5
LSM11P83369 AC022384.1-202ENST00000450534 2831 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.64e-6■■■■■ 39.5
LSM11P83369 AC022384.1-201ENST00000437082 2270 ntAPPRIS P5 TSL 210.21□□□□□ -0.784e-6■■■■■ 39.5
LSM11P83369 TATDN2-203ENST00000448281 4484 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.924e-6■■■■■ 39.5
LSM11P83369 CPNE7-209ENST00000568977 682 ntTSL 516.08■□□□□ 0.163e-7■■■■■ 39.4
LSM11P83369 CPNE7-207ENST00000564421 517 ntTSL 315.38■□□□□ 0.053e-7■■■■■ 39.4
LSM11P83369 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.18e-7■■■■■ 39.4
LSM11P83369 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.038e-7■■■■■ 39.4
LSM11P83369 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.46□□□□□ -0.093e-10■■■■■ 39.4
LSM11P83369 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.188e-7■■■■■ 39.4
LSM11P83369 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.518e-7■■■■■ 39.4
LSM11P83369 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC8.59□□□□□ -1.033e-10■■■■■ 39.4
LSM11P83369 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC8.27□□□□□ -1.093e-10■■■■■ 39.4
LSM11P83369 ASXL1-205ENST00000497249 296 ntTSL 57.22□□□□□ -1.253e-10■■■■■ 39.4
LSM11P83369 TBCD-217ENST00000574975 867 ntTSL 59.1□□□□□ -0.957e-8■■■■■ 39.2
LSM11P83369 MIR4732-201ENST00000581873 76 ntBASIC5.82□□□□□ -1.486e-21■■■■■ 39
LSM11P83369 MIR144-201ENST00000384886 86 ntBASIC2.25□□□□□ -2.056e-21■■■■■ 39
LSM11P83369 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.028e-8■■■■■ 38.9
LSM11P83369 SMCHD1-204ENST00000581226 459 ntTSL 310.41□□□□□ -0.748e-8■■■■■ 38.9
LSM11P83369 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.02□□□□□ -0.177e-8■■■■■ 38.8
LSM11P83369 RNF24-202ENST00000358395 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.527e-8■■■■■ 38.8
LSM11P83369 RNF24-201ENST00000336095 7453 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.687e-8■■■■■ 38.8
LSM11P83369 DDX56-209ENST00000473924 385 ntTSL 510.99□□□□□ -0.655e-11■■■■■ 38.7
LSM11P83369 PAXIP1-204ENST00000457196 3990 ntTSL 520.11■□□□□ 0.817e-9■■■■■ 38.6
LSM11P83369 ENOSF1-215ENST00000583771 436 ntTSL 519.87■□□□□ 0.777e-9■■■■■ 38.6
LSM11P83369 ENOSF1-218ENST00000584453 1230 ntTSL 519.84■□□□□ 0.777e-9■■■■■ 38.6
LSM11P83369 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.56■□□□□ 0.728e-17■■■■■ 38.6
LSM11P83369 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.697e-9■■■■■ 38.6
LSM11P83369 ENOSF1-210ENST00000581332 451 ntTSL 418.74■□□□□ 0.597e-9■■■■■ 38.6
LSM11P83369 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.576e-10■■■■■ 38.6
LSM11P83369 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.51■□□□□ 0.397e-9■■■■■ 38.6
LSM11P83369 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.237e-9■■■■■ 38.6
LSM11P83369 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.227e-9■■■■■ 38.6
LSM11P83369 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.31■□□□□ 0.27e-9■■■■■ 38.6
LSM11P83369 ENOSF1-211ENST00000581475 1745 ntTSL 1 (best)16.22■□□□□ 0.196e-10■■■■■ 38.6
LSM11P83369 ENOSF1-206ENST00000578651 1177 ntTSL 215.79■□□□□ 0.127e-9■■■■■ 38.6
LSM11P83369 TMEM161B-206ENST00000507872 1250 ntTSL 215.63■□□□□ 0.097e-9■■■■■ 38.6
LSM11P83369 TMEM161B-202ENST00000503194 570 ntTSL 415.41■□□□□ 0.067e-9■■■■■ 38.6
LSM11P83369 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.048e-17■■■■■ 38.6
LSM11P83369 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.037e-9■■■■■ 38.6
LSM11P83369 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.98□□□□□ -0.016e-10■■■■■ 38.6
LSM11P83369 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.037e-9■■■■■ 38.6
LSM11P83369 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.86□□□□□ -0.037e-9■■■■■ 38.6
LSM11P83369 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.66□□□□□ -0.067e-9■■■■■ 38.6
LSM11P83369 SLC35C2-211ENST00000487729 803 ntTSL 514.41□□□□□ -0.17e-9■■■■■ 38.6
LSM11P83369 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.4□□□□□ -0.17e-9■■■■■ 38.6
LSM11P83369 N6AMT1-203ENST00000460212 1293 ntTSL 1 (best)14.37□□□□□ -0.117e-9■■■■■ 38.6
LSM11P83369 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.167e-9■■■■■ 38.6
LSM11P83369 SLC35C2-205ENST00000420518 588 ntTSL 313.99□□□□□ -0.177e-9■■■■■ 38.6
LSM11P83369 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.97□□□□□ -0.177e-9■■■■■ 38.6
LSM11P83369 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.187e-9■■■■■ 38.6
LSM11P83369 SLC35C2-208ENST00000481809 872 ntTSL 513.8□□□□□ -0.27e-9■■■■■ 38.6
LSM11P83369 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.78□□□□□ -0.27e-9■■■■■ 38.6
LSM11P83369 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.27e-9■■■■■ 38.6
LSM11P83369 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.51□□□□□ -0.256e-10■■■■■ 38.6
LSM11P83369 SLC35C2-210ENST00000484318 971 ntTSL 513.43□□□□□ -0.267e-9■■■■■ 38.6
LSM11P83369 TMEM161B-207ENST00000509387 963 ntTSL 2 BASIC13.22□□□□□ -0.297e-9■■■■■ 38.6
LSM11P83369 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.37e-9■■■■■ 38.6
LSM11P83369 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.317e-9■■■■■ 38.6
LSM11P83369 CDC14A-204ENST00000455467 841 ntTSL 312.82□□□□□ -0.368e-17■■■■■ 38.6
LSM11P83369 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC12.49□□□□□ -0.417e-9■■■■■ 38.6
LSM11P83369 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.48□□□□□ -0.417e-9■■■■■ 38.6
LSM11P83369 CDC14A-205ENST00000469387 818 ntTSL 312.05□□□□□ -0.488e-17■■■■■ 38.6
LSM11P83369 ANKMY1-201ENST00000272972 3228 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.57e-9■■■■■ 38.6
LSM11P83369 ENOSF1-207ENST00000579053 1313 ntTSL 511.93□□□□□ -0.57e-9■■■■■ 38.6
LSM11P83369 SLC35C2-206ENST00000424568 731 ntTSL 211.84□□□□□ -0.517e-9■■■■■ 38.6
LSM11P83369 CDC14A-201ENST00000336454 4137 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.538e-17■■■■■ 38.6
LSM11P83369 ENOSF1-203ENST00000383578 4188 ntTSL 1 (best) BASIC11.63□□□□□ -0.556e-10■■■■■ 38.6
LSM11P83369 ENOSF1-222ENST00000585128 1296 ntTSL 511.6□□□□□ -0.556e-10■■■■■ 38.6
LSM11P83369 TMEM161B-203ENST00000503755 582 ntTSL 311.39□□□□□ -0.597e-9■■■■■ 38.6
LSM11P83369 ENOSF1-208ENST00000580605 699 ntTSL 311.24□□□□□ -0.617e-9■■■■■ 38.6
LSM11P83369 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC11.22□□□□□ -0.617e-9■■■■■ 38.6
LSM11P83369 NAA50-203ENST00000477813 1945 ntTSL 5 BASIC10.54□□□□□ -0.727e-9■■■■■ 38.6
LSM11P83369 N6AMT1-202ENST00000351429 4781 ntTSL 1 (best) BASIC10.07□□□□□ -0.87e-9■■■■■ 38.6
LSM11P83369 TMEM161B-213ENST00000514135 2035 ntTSL 2 BASIC10.04□□□□□ -0.87e-9■■■■■ 38.6
LSM11P83369 NAF1-205ENST00000509434 385 ntTSL 3 BASIC9.99□□□□□ -0.817e-9■■■■■ 38.6
LSM11P83369 PAXIP1-201ENST00000397192 3711 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.827e-9■■■■■ 38.6
LSM11P83369 N6AMT1-201ENST00000303775 4865 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.837e-9■■■■■ 38.6
LSM11P83369 NAA50-210ENST00000616174 3257 ntTSL 2 BASIC9.8□□□□□ -0.847e-9■■■■■ 38.6
LSM11P83369 TMEM161B-215ENST00000515477 689 ntTSL 39.6□□□□□ -0.877e-9■■■■■ 38.6
LSM11P83369 CAB39-207ENST00000614925 1619 ntTSL 5 BASIC9.11□□□□□ -0.957e-9■■■■■ 38.6
LSM11P83369 ENOSF1-221ENST00000585004 1501 ntTSL 29.1□□□□□ -0.957e-9■■■■■ 38.6
LSM11P83369 TMEM161B-201ENST00000296595 2594 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.957e-9■■■■■ 38.6
LSM11P83369 TMEM161B-204ENST00000503943 579 ntTSL 39.09□□□□□ -0.957e-9■■■■■ 38.6
Retrieved 100 of 11,495 protein–RNA pairs in 385 ms