Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 YOR161W-AYOR161W-A 81 nt0.46□□□□□ -2.34
YNL040WP53960 YOR192C-BYOR192C-B 5313 nt0.45□□□□□ -2.34
YNL040WP53960 OST4YDL232W 111 nt0.45□□□□□ -2.34
YNL040WP53960 ULI1YFR026C 510 nt0.45□□□□□ -2.34
YNL040WP53960 YGL052WYGL052W 306 nt0.45□□□□□ -2.34
YNL040WP53960 YMR172C-AYMR172C-A 384 nt0.45□□□□□ -2.34
YNL040WP53960 HAL9YOL089C 3093 nt0.45□□□□□ -2.34
YNL040WP53960 snR74snR74 88 nt0.44□□□□□ -2.34
YNL040WP53960 YGL123C-AYGL123C-A 231 nt0.44□□□□□ -2.34
YNL040WP53960 YNL277W-AYNL277W-A 189 nt0.44□□□□□ -2.34
YNL040WP53960 YPR010C-AYPR010C-A 219 nt0.44□□□□□ -2.34
YNL040WP53960 PRP42YDR235W 1635 nt0.44□□□□□ -2.34
YNL040WP53960 YOR008C-AYOR008C-A 225 nt0.43□□□□□ -2.34
YNL040WP53960 YOR345CYOR345C 351 nt0.43□□□□□ -2.34
YNL040WP53960 PET111YMR257C 2403 nt0.43□□□□□ -2.34
YNL040WP53960 BLI1YKL061W 342 nt0.41□□□□□ -2.34
YNL040WP53960 AI1Q0050 2505 nt0.41□□□□□ -2.34
YNL040WP53960 MLP1YKR095W 5628 nt0.4□□□□□ -2.35
YNL040WP53960 BEM3YPL115C 3387 nt0.4□□□□□ -2.35
YNL040WP53960 YCR022CYCR022C 345 nt0.38□□□□□ -2.35
YNL040WP53960 snR65snR65 100 nt0.38□□□□□ -2.35
YNL040WP53960 COX12YLR038C 252 nt0.38□□□□□ -2.35
YNL040WP53960 YER053C-AYER053C-A 114 nt0.37□□□□□ -2.35
YNL040WP53960 SBH1YER087C-B 249 nt0.37□□□□□ -2.35
YNL040WP53960 Q0142Q0142 177 nt0.37□□□□□ -2.35
YNL040WP53960 YKL100W-AYKL100W-A 90 nt0.37□□□□□ -2.35
YNL040WP53960 YNL146WYNL146W 303 nt0.36□□□□□ -2.35
YNL040WP53960 NNF2YGR089W 2811 nt0.35□□□□□ -2.35
YNL040WP53960 YSP1YHR155W 3687 nt0.35□□□□□ -2.35
YNL040WP53960 YCR038W-AYCR038W-A 126 nt0.34□□□□□ -2.36
YNL040WP53960 YIR030W-AYIR030W-A 384 nt0.34□□□□□ -2.36
YNL040WP53960 YLR041WYLR041W 321 nt0.34□□□□□ -2.36
YNL040WP53960 IQG1YPL242C 4488 nt0.33□□□□□ -2.36
YNL040WP53960 YDR366CYDR366C 399 nt0.33□□□□□ -2.36
YNL040WP53960 MLP2YIL149C 5040 nt0.32□□□□□ -2.36
YNL040WP53960 YDR371C-AYDR371C-A 105 nt0.32□□□□□ -2.36
YNL040WP53960 YHR131W-AYHR131W-A 246 nt0.32□□□□□ -2.36
YNL040WP53960 ORC3YLL004W 1851 nt0.31□□□□□ -2.36
YNL040WP53960 BIR1YJR089W 2865 nt0.31□□□□□ -2.36
YNL040WP53960 SNU13YEL026W 381 nt0.31□□□□□ -2.36
YNL040WP53960 RPS26AYGL189C 360 nt0.31□□□□□ -2.36
YNL040WP53960 tF(GAA)QtF(GAA)Q 75 nt0.3□□□□□ -2.36
YNL040WP53960 YER078W-AYER078W-A 165 nt0.3□□□□□ -2.36
YNL040WP53960 YIL002W-AYIL002W-A 210 nt0.3□□□□□ -2.36
YNL040WP53960 YLL006W-AYLL006W-A 177 nt0.29□□□□□ -2.36
YNL040WP53960 YOR231C-AYOR231C-A 201 nt0.29□□□□□ -2.36
YNL040WP53960 YBR182C-AYBR182C-A 195 nt0.29□□□□□ -2.36
YNL040WP53960 snR49snR49 165 nt0.29□□□□□ -2.36
YNL040WP53960 UTP8YGR128C 2142 nt0.29□□□□□ -2.36
YNL040WP53960 YKU70YMR284W 1809 nt0.29□□□□□ -2.36
YNL040WP53960 snR55snR55 98 nt0.28□□□□□ -2.36
YNL040WP53960 YPL152W-AYPL152W-A 99 nt0.28□□□□□ -2.36
YNL040WP53960 NIP1YMR309C 2439 nt0.28□□□□□ -2.36
YNL040WP53960 YNL054W-BYNL054W-B 5250 nt0.28□□□□□ -2.36
YNL040WP53960 APQ12YIL040W 417 nt0.27□□□□□ -2.37
YNL040WP53960 ABF2YMR072W 552 nt0.27□□□□□ -2.37
YNL040WP53960 YGL041CYGL041C 204 nt0.25□□□□□ -2.37
YNL040WP53960 BUL2YML111W 2763 nt0.24□□□□□ -2.37
YNL040WP53960 YBR072C-AYBR072C-A 162 nt0.23□□□□□ -2.37
YNL040WP53960 YBR131C-AYBR131C-A 90 nt0.23□□□□□ -2.37
YNL040WP53960 THO2YNL139C 4794 nt0.23□□□□□ -2.37
YNL040WP53960 RCO1YMR075W 2055 nt0.23□□□□□ -2.37
YNL040WP53960 YER181CYER181C 324 nt0.22□□□□□ -2.37
YNL040WP53960 YLR232WYLR232W 348 nt0.22□□□□□ -2.37
YNL040WP53960 YOL155W-AYOL155W-A 135 nt0.22□□□□□ -2.37
YNL040WP53960 YML099W-AYML099W-A 330 nt0.21□□□□□ -2.38
YNL040WP53960 YBL100W-BYBL100W-B 5313 nt0.2□□□□□ -2.38
YNL040WP53960 TAH1YCR060W 336 nt0.19□□□□□ -2.38
YNL040WP53960 YDR544CYDR544C 429 nt0.19□□□□□ -2.38
YNL040WP53960 YEL073CYEL073C 324 nt0.18□□□□□ -2.38
YNL040WP53960 YGL188C-AYGL188C-A 141 nt0.18□□□□□ -2.38
YNL040WP53960 YOL013W-AYOL013W-A 192 nt0.18□□□□□ -2.38
YNL040WP53960 SDH6YDR379C-A 240 nt0.17□□□□□ -2.38
YNL040WP53960 ESP1YGR098C 4893 nt0.16□□□□□ -2.38
YNL040WP53960 PRP39YML046W 1890 nt0.16□□□□□ -2.38
YNL040WP53960 YMR158W-BYMR158W-B 321 nt0.16□□□□□ -2.38
YNL040WP53960 YOR186C-AYOR186C-A 210 nt0.16□□□□□ -2.38
YNL040WP53960 YOR302WYOR302W 78 nt0.15□□□□□ -2.39
YNL040WP53960 YEL014CYEL014C 306 nt0.14□□□□□ -2.39
YNL040WP53960 YBL039C-AYBL039C-A 84 nt0.14□□□□□ -2.39
YNL040WP53960 GLG1YKR058W 1851 nt0.13□□□□□ -2.39
YNL040WP53960 CSE1YGL238W 2883 nt0.13□□□□□ -2.39
YNL040WP53960 snR80snR80 171 nt0.11□□□□□ -2.39
YNL040WP53960 YJL182CYJL182C 318 nt0.11□□□□□ -2.39
YNL040WP53960 COG6YNL041C 2520 nt0.1□□□□□ -2.39
YNL040WP53960 YNL097C-BYNL097C-B 123 nt0.1□□□□□ -2.39
YNL040WP53960 RPM2YML091C 3609 nt0.09□□□□□ -2.39
YNL040WP53960 YGL182CYGL182C 324 nt0.09□□□□□ -2.4
YNL040WP53960 snR45snR45 172 nt0.07□□□□□ -2.4
YNL040WP53960 YOR314W-AYOR314W-A 111 nt0.04□□□□□ -2.4
YNL040WP53960 YBR099CYBR099C 384 nt0.04□□□□□ -2.4
YNL040WP53960 SOV1YMR066W 2697 nt0.04□□□□□ -2.4
YNL040WP53960 YOR381W-AYOR381W-A 168 nt0.03□□□□□ -2.4
YNL040WP53960 snR8snR8 190 nt0.02□□□□□ -2.41
YNL040WP53960 YPL060C-AYPL060C-A 3315 nt-0.01□□□□□ -2.41
YNL040WP53960 EST1YLR233C 2100 nt-0.01□□□□□ -2.41
YNL040WP53960 YDR210WYDR210W 228 nt-0.02□□□□□ -2.41
YNL040WP53960 snR52snR52 92 nt-0.02□□□□□ -2.41
YNL040WP53960 YOR170WYOR170W 306 nt-0.03□□□□□ -2.41
YNL040WP53960 snR46snR46 197 nt-0.04□□□□□ -2.42
Retrieved 100 of 7,029 protein–RNA pairs in 7.7 ms