Protein–RNA interactions for Protein: P47061

VPS53, Vacuolar protein sorting-associated protein 53, yeastyeast

Predictions only

Length 822 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS53P47061 SET3YKR029C 2256 nt1.82□□□□□ -2.12
VPS53P47061 SEC21YNL287W 2808 nt1.81□□□□□ -2.12
VPS53P47061 VPS15YBR097W 4365 nt1.81□□□□□ -2.12
VPS53P47061 TRM732YMR259C 4263 nt1.8□□□□□ -2.12
VPS53P47061 YCS4YLR272C 3531 nt1.8□□□□□ -2.12
VPS53P47061 YMR247W-AYMR247W-A 144 nt1.8□□□□□ -2.12
VPS53P47061 FYV10YIL097W 1551 nt1.8□□□□□ -2.12
VPS53P47061 MEC1YBR136W 7107 nt1.79□□□□□ -2.12
VPS53P47061 tM(CAU)Q2tM(CAU)Q2 78 nt1.79□□□□□ -2.12
VPS53P47061 IRA1YBR140C 9279 nt1.79□□□□□ -2.12
VPS53P47061 ASE1YOR058C 2658 nt1.78□□□□□ -2.12
VPS53P47061 CAT8YMR280C 4302 nt1.77□□□□□ -2.13
VPS53P47061 YDR210WYDR210W 228 nt1.76□□□□□ -2.13
VPS53P47061 YLR232WYLR232W 348 nt1.76□□□□□ -2.13
VPS53P47061 snR190snR190 190 nt1.76□□□□□ -2.13
VPS53P47061 WAR1YML076C 2835 nt1.76□□□□□ -2.13
VPS53P47061 MSH3YCR092C 3057 nt1.75□□□□□ -2.13
VPS53P47061 HUG1YML058W-A 207 nt1.75□□□□□ -2.13
VPS53P47061 GEA2YEL022W 4380 nt1.75□□□□□ -2.13
VPS53P47061 SSK2YNR031C 4740 nt1.73□□□□□ -2.13
VPS53P47061 KAP120YPL125W 3099 nt1.72□□□□□ -2.13
VPS53P47061 APL3YBL037W 3078 nt1.72□□□□□ -2.13
VPS53P47061 RPL26BYGR034W 384 nt1.71□□□□□ -2.14
VPS53P47061 tS(GCU)Q1tS(GCU)Q1 86 nt1.71□□□□□ -2.14
VPS53P47061 SWI4YER111C 3282 nt1.7□□□□□ -2.14
VPS53P47061 YGR130CYGR130C 2451 nt1.69□□□□□ -2.14
VPS53P47061 YIL142C-AYIL142C-A 333 nt1.69□□□□□ -2.14
VPS53P47061 YJL127W-AYJL127W-A 117 nt1.69□□□□□ -2.14
VPS53P47061 SEC3YER008C 4011 nt1.67□□□□□ -2.14
VPS53P47061 BST1YFL025C 3090 nt1.67□□□□□ -2.14
VPS53P47061 NUP188YML103C 4968 nt1.67□□□□□ -2.14
VPS53P47061 snR81snR81 201 nt1.67□□□□□ -2.14
VPS53P47061 SXM1YDR395W 2835 nt1.67□□□□□ -2.14
VPS53P47061 BIR1YJR089W 2865 nt1.66□□□□□ -2.14
VPS53P47061 YBR200W-AYBR200W-A 165 nt1.65□□□□□ -2.15
VPS53P47061 RAD9YDR217C 3930 nt1.65□□□□□ -2.15
VPS53P47061 SEC1YDR164C 2175 nt1.64□□□□□ -2.15
VPS53P47061 YGR146C-AYGR146C-A 162 nt1.64□□□□□ -2.15
VPS53P47061 YNL266WYNL266W 420 nt1.63□□□□□ -2.15
VPS53P47061 CDC39YCR093W 6327 nt1.63□□□□□ -2.15
VPS53P47061 YBR072C-AYBR072C-A 162 nt1.61□□□□□ -2.15
VPS53P47061 NUP145YGL092W 3954 nt1.61□□□□□ -2.15
VPS53P47061 tQ(UUG)E2tQ(UUG)E2 72 nt1.6□□□□□ -2.15
VPS53P47061 PET127YOR017W 2403 nt1.6□□□□□ -2.15
VPS53P47061 YDL073WYDL073W 2955 nt1.59□□□□□ -2.15
VPS53P47061 YLL066W-BYLL066W-B 171 nt1.59□□□□□ -2.15
VPS53P47061 CCH1YGR217W 6120 nt1.59□□□□□ -2.16
VPS53P47061 EST2YLR318W 2655 nt1.57□□□□□ -2.16
VPS53P47061 AZF1YOR113W 2745 nt1.57□□□□□ -2.16
VPS53P47061 ROM2YLR371W 4071 nt1.57□□□□□ -2.16
VPS53P47061 tN(GUU)QtN(GUU)Q 71 nt1.57□□□□□ -2.16
VPS53P47061 YAL037C-AYAL037C-A 93 nt1.57□□□□□ -2.16
VPS53P47061 snR45snR45 172 nt1.57□□□□□ -2.16
VPS53P47061 SPC110YDR356W 2835 nt1.57□□□□□ -2.16
VPS53P47061 SEC8YPR055W 3198 nt1.56□□□□□ -2.16
VPS53P47061 MSN5YDR335W 3675 nt1.56□□□□□ -2.16
VPS53P47061 FYV8YGR196C 2454 nt1.56□□□□□ -2.16
VPS53P47061 tH(GUG)E1tH(GUG)E1 72 nt1.55□□□□□ -2.16
VPS53P47061 tH(GUG)E2tH(GUG)E2 72 nt1.55□□□□□ -2.16
VPS53P47061 tH(GUG)G1tH(GUG)G1 72 nt1.55□□□□□ -2.16
VPS53P47061 tH(GUG)G2tH(GUG)G2 72 nt1.55□□□□□ -2.16
VPS53P47061 tH(GUG)HtH(GUG)H 72 nt1.55□□□□□ -2.16
VPS53P47061 tH(GUG)KtH(GUG)K 72 nt1.55□□□□□ -2.16
VPS53P47061 tH(GUG)MtH(GUG)M 72 nt1.55□□□□□ -2.16
VPS53P47061 LAA1YJL207C 6045 nt1.55□□□□□ -2.16
VPS53P47061 IML1YJR138W 4755 nt1.55□□□□□ -2.16
VPS53P47061 CDC25YLR310C 4770 nt1.53□□□□□ -2.16
VPS53P47061 CLU1YMR012W 3834 nt1.53□□□□□ -2.17
VPS53P47061 RPM2YML091C 3609 nt1.52□□□□□ -2.17
VPS53P47061 YPR160W-AYPR160W-A 81 nt1.52□□□□□ -2.17
VPS53P47061 PRP16YKR086W 3216 nt1.52□□□□□ -2.17
VPS53P47061 YLR399W-AYLR399W-A 105 nt1.51□□□□□ -2.17
VPS53P47061 YNL284C-BYNL284C-B 5268 nt1.51□□□□□ -2.17
VPS53P47061 YOL083C-AYOL083C-A 141 nt1.49□□□□□ -2.17
VPS53P47061 NNF2YGR089W 2811 nt1.48□□□□□ -2.17
VPS53P47061 BEM3YPL115C 3387 nt1.48□□□□□ -2.17
VPS53P47061 tV(UAC)BtV(UAC)B 74 nt1.47□□□□□ -2.17
VPS53P47061 tV(UAC)DtV(UAC)D 74 nt1.47□□□□□ -2.17
VPS53P47061 UBP3YER151C 2739 nt1.47□□□□□ -2.17
VPS53P47061 PIK1YNL267W 3201 nt1.46□□□□□ -2.18
VPS53P47061 YBL071C-BYBL071C-B 99 nt1.46□□□□□ -2.18
VPS53P47061 snR62snR62 100 nt1.45□□□□□ -2.18
VPS53P47061 YBR196C-AYBR196C-A 150 nt1.43□□□□□ -2.18
VPS53P47061 YSP1YHR155W 3687 nt1.43□□□□□ -2.18
VPS53P47061 HKR1YDR420W 5409 nt1.43□□□□□ -2.18
VPS53P47061 SEC10YLR166C 2616 nt1.41□□□□□ -2.18
VPS53P47061 RPS26AYGL189C 360 nt1.4□□□□□ -2.19
VPS53P47061 GLG1YKR058W 1851 nt1.39□□□□□ -2.19
VPS53P47061 ULP2YIL031W 3105 nt1.37□□□□□ -2.19
VPS53P47061 MYO1YHR023W 5787 nt1.37□□□□□ -2.19
VPS53P47061 SIP4YJL089W 2490 nt1.36□□□□□ -2.19
VPS53P47061 SPT7YBR081C 3999 nt1.32□□□□□ -2.2
VPS53P47061 PAU12YGR294W 363 nt1.32□□□□□ -2.2
VPS53P47061 YLR286W-AYLR286W-A 135 nt1.32□□□□□ -2.2
VPS53P47061 YOL164W-AYOL164W-A 183 nt1.32□□□□□ -2.2
VPS53P47061 PAU24YBR301W 363 nt1.32□□□□□ -2.2
VPS53P47061 YDR034C-AYDR034C-A 177 nt1.29□□□□□ -2.2
VPS53P47061 YPL060C-AYPL060C-A 3315 nt1.28□□□□□ -2.2
VPS53P47061 EST1YLR233C 2100 nt1.28□□□□□ -2.2
VPS53P47061 BUD3YCL014W 4911 nt1.27□□□□□ -2.21
Retrieved 100 of 7,029 protein–RNA pairs in 46 ms