Protein–RNA interactions for Protein: P38854

TDA11, Topoisomerase I damage affected protein 11, yeastyeast

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDA11P38854 YFL063WYFL063W 456 nt0.15□□□□□ -2.39
TDA11P38854 YGR069WYGR069W 336 nt0.14□□□□□ -2.39
TDA11P38854 YAF9YNL107W 681 nt0.13□□□□□ -2.39
TDA11P38854 CSE2YNR010W 450 nt0.12□□□□□ -2.39
TDA11P38854 snR60snR60 104 nt0.11□□□□□ -2.39
TDA11P38854 YGL123C-AYGL123C-A 231 nt0.11□□□□□ -2.39
TDA11P38854 YJL197C-AYJL197C-A 282 nt0.11□□□□□ -2.39
TDA11P38854 YHR131W-AYHR131W-A 246 nt0.1□□□□□ -2.39
TDA11P38854 SOV1YMR066W 2697 nt0.1□□□□□ -2.39
TDA11P38854 YDR183C-AYDR183C-A 258 nt0.09□□□□□ -2.4
TDA11P38854 snR45snR45 172 nt0.09□□□□□ -2.4
TDA11P38854 YIL032CYIL032C 357 nt0.08□□□□□ -2.4
TDA11P38854 YLL019W-AYLL019W-A 93 nt0.08□□□□□ -2.4
TDA11P38854 YOR015WYOR015W 360 nt0.08□□□□□ -2.4
TDA11P38854 YKU70YMR284W 1809 nt0.06□□□□□ -2.4
TDA11P38854 MYO1YHR023W 5787 nt0.06□□□□□ -2.4
TDA11P38854 YEL073CYEL073C 324 nt0.06□□□□□ -2.4
TDA11P38854 YFL019CYFL019C 354 nt0.06□□□□□ -2.4
TDA11P38854 BLI1YKL061W 342 nt0.06□□□□□ -2.4
TDA11P38854 COX12YLR038C 252 nt0.06□□□□□ -2.4
TDA11P38854 YLL006W-AYLL006W-A 177 nt0.05□□□□□ -2.4
TDA11P38854 YPR012WYPR012W 255 nt0.05□□□□□ -2.4
TDA11P38854 SNU13YEL026W 381 nt0.04□□□□□ -2.4
TDA11P38854 YPL060C-AYPL060C-A 3315 nt0.03□□□□□ -2.41
TDA11P38854 YKL100W-AYKL100W-A 90 nt0.02□□□□□ -2.41
TDA11P38854 YOR186C-AYOR186C-A 210 nt0.02□□□□□ -2.41
TDA11P38854 ATP6Q0085 780 nt0.01□□□□□ -2.41
TDA11P38854 YLR120W-AYLR120W-A 102 nt0.01□□□□□ -2.41
TDA11P38854 YMR193C-AYMR193C-A 387 nt0□□□□□ -2.41
TDA11P38854 YDR366CYDR366C 399 nt-0.01□□□□□ -2.41
TDA11P38854 YNL028WYNL028W 318 nt-0.01□□□□□ -2.41
TDA11P38854 YER053C-AYER053C-A 114 nt-0.02□□□□□ -2.41
TDA11P38854 YPR197CYPR197C 564 nt-0.04□□□□□ -2.42
TDA11P38854 HMRA1YCR097W 381 nt-0.05□□□□□ -2.42
TDA11P38854 YPR170W-AYPR170W-A 186 nt-0.05□□□□□ -2.42
TDA11P38854 snR36snR36 182 nt-0.05□□□□□ -2.42
TDA11P38854 CSE1YGL238W 2883 nt-0.06□□□□□ -2.42
TDA11P38854 snR74snR74 88 nt-0.06□□□□□ -2.42
TDA11P38854 YOR072W-BYOR072W-B 162 nt-0.06□□□□□ -2.42
TDA11P38854 YPL038W-AYPL038W-A 192 nt-0.06□□□□□ -2.42
TDA11P38854 YMR172C-AYMR172C-A 384 nt-0.07□□□□□ -2.42
TDA11P38854 YBR072C-AYBR072C-A 162 nt-0.07□□□□□ -2.42
TDA11P38854 TFB5YDR079C-A 219 nt-0.08□□□□□ -2.42
TDA11P38854 YGL149WYGL149W 306 nt-0.08□□□□□ -2.42
TDA11P38854 YDL240C-AYDL240C-A 138 nt-0.09□□□□□ -2.42
TDA11P38854 YIL002W-AYIL002W-A 210 nt-0.09□□□□□ -2.42
TDA11P38854 RPM2YML091C 3609 nt-0.1□□□□□ -2.43
TDA11P38854 YFL032WYFL032W 321 nt-0.1□□□□□ -2.43
TDA11P38854 YLR232WYLR232W 348 nt-0.11□□□□□ -2.43
TDA11P38854 YMR158W-BYMR158W-B 321 nt-0.12□□□□□ -2.43
TDA11P38854 RAD61YDR014W 1944 nt-0.13□□□□□ -2.43
TDA11P38854 YER097WYER097W 330 nt-0.14□□□□□ -2.43
TDA11P38854 YGL052WYGL052W 306 nt-0.14□□□□□ -2.43
TDA11P38854 GLG1YKR058W 1851 nt-0.14□□□□□ -2.43
TDA11P38854 YBR099CYBR099C 384 nt-0.15□□□□□ -2.43
TDA11P38854 YCR038W-AYCR038W-A 126 nt-0.17□□□□□ -2.44
TDA11P38854 SDH6YDR379C-A 240 nt-0.17□□□□□ -2.44
TDA11P38854 YGR164WYGR164W 336 nt-0.18□□□□□ -2.44
TDA11P38854 RPL39YJL189W 156 nt-0.18□□□□□ -2.44
TDA11P38854 YDR413CYDR413C 576 nt-0.19□□□□□ -2.44
TDA11P38854 YKL118WYKL118W 312 nt-0.19□□□□□ -2.44
TDA11P38854 APQ12YIL040W 417 nt-0.2□□□□□ -2.44
TDA11P38854 YIR030W-AYIR030W-A 384 nt-0.21□□□□□ -2.44
TDA11P38854 snR8snR8 190 nt-0.22□□□□□ -2.44
TDA11P38854 YDR210WYDR210W 228 nt-0.22□□□□□ -2.44
TDA11P38854 snR46snR46 197 nt-0.22□□□□□ -2.44
TDA11P38854 YOR008C-AYOR008C-A 225 nt-0.24□□□□□ -2.45
TDA11P38854 GIM4YEL003W 336 nt-0.25□□□□□ -2.45
TDA11P38854 YNL277W-AYNL277W-A 189 nt-0.26□□□□□ -2.45
TDA11P38854 snR128snR128 126 nt-0.26□□□□□ -2.45
TDA11P38854 EST1YLR233C 2100 nt-0.26□□□□□ -2.45
TDA11P38854 COG6YNL041C 2520 nt-0.29□□□□□ -2.46
TDA11P38854 tF(GAA)QtF(GAA)Q 75 nt-0.29□□□□□ -2.46
TDA11P38854 YBL039C-AYBL039C-A 84 nt-0.3□□□□□ -2.46
TDA11P38854 YDR544CYDR544C 429 nt-0.32□□□□□ -2.46
TDA11P38854 YBR182C-AYBR182C-A 195 nt-0.34□□□□□ -2.46
TDA11P38854 YOR314W-AYOR314W-A 111 nt-0.36□□□□□ -2.47
TDA11P38854 YPR010C-AYPR010C-A 219 nt-0.36□□□□□ -2.47
TDA11P38854 SBH2YER019C-A 267 nt-0.38□□□□□ -2.47
TDA11P38854 YER181CYER181C 324 nt-0.39□□□□□ -2.47
TDA11P38854 YML099W-AYML099W-A 330 nt-0.4□□□□□ -2.47
TDA11P38854 YGL041CYGL041C 204 nt-0.41□□□□□ -2.48
TDA11P38854 YGL182CYGL182C 324 nt-0.41□□□□□ -2.48
TDA11P38854 YJL113WYJL113W 4647 nt-0.41□□□□□ -2.48
TDA11P38854 YHR175W-AYHR175W-A 150 nt-0.42□□□□□ -2.48
TDA11P38854 SEC10YLR166C 2616 nt-0.45□□□□□ -2.48
TDA11P38854 YNL097C-BYNL097C-B 123 nt-0.45□□□□□ -2.48
TDA11P38854 tR(ACG)Q2tR(ACG)Q2 74 nt-0.46□□□□□ -2.48
TDA11P38854 URB1YKL014C 5295 nt-0.47□□□□□ -2.48
TDA11P38854 snR56snR56 88 nt-0.48□□□□□ -2.49
TDA11P38854 YBR131C-AYBR131C-A 90 nt-0.48□□□□□ -2.49
TDA11P38854 snR65snR65 100 nt-0.5□□□□□ -2.49
TDA11P38854 YJL182CYJL182C 318 nt-0.5□□□□□ -2.49
TDA11P38854 snR49snR49 165 nt-0.51□□□□□ -2.49
TDA11P38854 YEL014CYEL014C 306 nt-0.52□□□□□ -2.49
TDA11P38854 YML100W-AYML100W-A 174 nt-0.52□□□□□ -2.49
TDA11P38854 snR55snR55 98 nt-0.53□□□□□ -2.49
TDA11P38854 YPL152W-AYPL152W-A 99 nt-0.53□□□□□ -2.49
TDA11P38854 YOR170WYOR170W 306 nt-0.55□□□□□ -2.5
TDA11P38854 YOR381W-AYOR381W-A 168 nt-0.55□□□□□ -2.5
Retrieved 100 of 7,029 protein–RNA pairs in 44.6 ms