Protein–RNA interactions for Protein: P0CX71

TY1A-ER1, Transposon Ty1-ER1 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-ER1P0CX71 YBR072C-AYBR072C-A 162 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 FKS1YLR342W 5631 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 RAD9YDR217C 3930 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 SWI4YER111C 3282 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 YLR419WYLR419W 4308 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 tC(GCA)BtC(GCA)B 72 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 tC(GCA)GtC(GCA)G 72 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 tC(GCA)P1tC(GCA)P1 72 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 tC(GCA)P2tC(GCA)P2 72 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 NUP145YGL092W 3954 nt1.72□□□□□ -2.13
TY1A-ER1P0CX71 snR45snR45 172 nt1.71□□□□□ -2.14
TY1A-ER1P0CX71 BEM3YPL115C 3387 nt1.7□□□□□ -2.14
TY1A-ER1P0CX71 SEC8YPR055W 3198 nt1.69□□□□□ -2.14
TY1A-ER1P0CX71 PRP16YKR086W 3216 nt1.69□□□□□ -2.14
TY1A-ER1P0CX71 MON2YNL297C 4911 nt1.69□□□□□ -2.14
TY1A-ER1P0CX71 YMR247W-AYMR247W-A 144 nt1.69□□□□□ -2.14
TY1A-ER1P0CX71 BST1YFL025C 3090 nt1.68□□□□□ -2.14
TY1A-ER1P0CX71 SEC3YER008C 4011 nt1.68□□□□□ -2.14
TY1A-ER1P0CX71 PKH3YDR466W 2697 nt1.67□□□□□ -2.14
TY1A-ER1P0CX71 ASE1YOR058C 2658 nt1.66□□□□□ -2.14
TY1A-ER1P0CX71 DNA2YHR164C 4569 nt1.66□□□□□ -2.14
TY1A-ER1P0CX71 UTP22YGR090W 3714 nt1.66□□□□□ -2.14
TY1A-ER1P0CX71 AZF1YOR113W 2745 nt1.65□□□□□ -2.15
TY1A-ER1P0CX71 YDL073WYDL073W 2955 nt1.64□□□□□ -2.15
TY1A-ER1P0CX71 snR62snR62 100 nt1.63□□□□□ -2.15
TY1A-ER1P0CX71 MBB1YJL199C 327 nt1.63□□□□□ -2.15
TY1A-ER1P0CX71 YLR399W-AYLR399W-A 105 nt1.62□□□□□ -2.15
TY1A-ER1P0CX71 CLU1YMR012W 3834 nt1.61□□□□□ -2.15
TY1A-ER1P0CX71 tT(UGU)HtT(UGU)H 72 nt1.61□□□□□ -2.15
TY1A-ER1P0CX71 YOL083C-AYOL083C-A 141 nt1.61□□□□□ -2.15
TY1A-ER1P0CX71 MSN5YDR335W 3675 nt1.61□□□□□ -2.15
TY1A-ER1P0CX71 NUP170YBL079W 4509 nt1.61□□□□□ -2.15
TY1A-ER1P0CX71 VPS15YBR097W 4365 nt1.6□□□□□ -2.15
TY1A-ER1P0CX71 PMD1YER132C 5262 nt1.6□□□□□ -2.15
TY1A-ER1P0CX71 NUP188YML103C 4968 nt1.59□□□□□ -2.15
TY1A-ER1P0CX71 YBR196C-AYBR196C-A 150 nt1.59□□□□□ -2.15
TY1A-ER1P0CX71 EST2YLR318W 2655 nt1.58□□□□□ -2.16
TY1A-ER1P0CX71 YSP1YHR155W 3687 nt1.58□□□□□ -2.16
TY1A-ER1P0CX71 PEP1YBL017C 4740 nt1.57□□□□□ -2.16
TY1A-ER1P0CX71 SAC3YDR159W 3906 nt1.57□□□□□ -2.16
TY1A-ER1P0CX71 snR70snR70 164 nt1.56□□□□□ -2.16
TY1A-ER1P0CX71 UBP3YER151C 2739 nt1.56□□□□□ -2.16
TY1A-ER1P0CX71 YPR160W-AYPR160W-A 81 nt1.55□□□□□ -2.16
TY1A-ER1P0CX71 tN(GUU)QtN(GUU)Q 71 nt1.54□□□□□ -2.16
TY1A-ER1P0CX71 CFT1YDR301W 4074 nt1.53□□□□□ -2.16
TY1A-ER1P0CX71 SXM1YDR395W 2835 nt1.53□□□□□ -2.16
TY1A-ER1P0CX71 YBL100W-CYBL100W-C 120 nt1.53□□□□□ -2.16
TY1A-ER1P0CX71 SEC10YLR166C 2616 nt1.53□□□□□ -2.17
TY1A-ER1P0CX71 YBL071C-BYBL071C-B 99 nt1.52□□□□□ -2.17
TY1A-ER1P0CX71 TRM732YMR259C 4263 nt1.52□□□□□ -2.17
TY1A-ER1P0CX71 GLG1YKR058W 1851 nt1.52□□□□□ -2.17
TY1A-ER1P0CX71 ULP2YIL031W 3105 nt1.51□□□□□ -2.17
TY1A-ER1P0CX71 YOR093CYOR093C 4947 nt1.51□□□□□ -2.17
TY1A-ER1P0CX71 DNF3YMR162C 4971 nt1.5□□□□□ -2.17
TY1A-ER1P0CX71 FAB1YFR019W 6837 nt1.47□□□□□ -2.17
TY1A-ER1P0CX71 PIK1YNL267W 3201 nt1.46□□□□□ -2.18
TY1A-ER1P0CX71 NNF2YGR089W 2811 nt1.46□□□□□ -2.18
TY1A-ER1P0CX71 RPS26AYGL189C 360 nt1.46□□□□□ -2.18
TY1A-ER1P0CX71 IRA1YBR140C 9279 nt1.45□□□□□ -2.18
TY1A-ER1P0CX71 YDR034C-AYDR034C-A 177 nt1.45□□□□□ -2.18
TY1A-ER1P0CX71 YOL164W-AYOL164W-A 183 nt1.45□□□□□ -2.18
TY1A-ER1P0CX71 ANS1YHR126C 480 nt1.44□□□□□ -2.18
TY1A-ER1P0CX71 PET127YOR017W 2403 nt1.44□□□□□ -2.18
TY1A-ER1P0CX71 tQ(UUG)E2tQ(UUG)E2 72 nt1.43□□□□□ -2.18
TY1A-ER1P0CX71 CDC39YCR093W 6327 nt1.43□□□□□ -2.18
TY1A-ER1P0CX71 REV3YPL167C 4515 nt1.41□□□□□ -2.18
TY1A-ER1P0CX71 YLR286W-AYLR286W-A 135 nt1.41□□□□□ -2.18
TY1A-ER1P0CX71 YGR240C-AYGR240C-A 201 nt1.4□□□□□ -2.19
TY1A-ER1P0CX71 YMR272W-BYMR272W-B 108 nt1.4□□□□□ -2.19
TY1A-ER1P0CX71 MEC1YBR136W 7107 nt1.39□□□□□ -2.19
TY1A-ER1P0CX71 tD(GUC)QtD(GUC)Q 75 nt1.39□□□□□ -2.19
TY1A-ER1P0CX71 FYV8YGR196C 2454 nt1.39□□□□□ -2.19
TY1A-ER1P0CX71 BRR2YER172C 6492 nt1.38□□□□□ -2.19
TY1A-ER1P0CX71 MSH3YCR092C 3057 nt1.38□□□□□ -2.19
TY1A-ER1P0CX71 SPC110YDR356W 2835 nt1.36□□□□□ -2.19
TY1A-ER1P0CX71 SSK2YNR031C 4740 nt1.36□□□□□ -2.19
TY1A-ER1P0CX71 HUG1YML058W-A 207 nt1.36□□□□□ -2.19
TY1A-ER1P0CX71 FIG2YCR089W 4830 nt1.36□□□□□ -2.19
TY1A-ER1P0CX71 YLL006W-AYLL006W-A 177 nt1.35□□□□□ -2.19
TY1A-ER1P0CX71 CSE1YGL238W 2883 nt1.34□□□□□ -2.19
TY1A-ER1P0CX71 CCH1YGR217W 6120 nt1.33□□□□□ -2.2
TY1A-ER1P0CX71 EST1YLR233C 2100 nt1.33□□□□□ -2.2
TY1A-ER1P0CX71 snR47snR47 99 nt1.32□□□□□ -2.2
TY1A-ER1P0CX71 YGR130CYGR130C 2451 nt1.32□□□□□ -2.2
TY1A-ER1P0CX71 SPT7YBR081C 3999 nt1.31□□□□□ -2.2
TY1A-ER1P0CX71 snR69snR69 101 nt1.3□□□□□ -2.2
TY1A-ER1P0CX71 YLR299C-AYLR299C-A 93 nt1.3□□□□□ -2.2
TY1A-ER1P0CX71 YDL159C-BYDL159C-B 177 nt1.28□□□□□ -2.2
TY1A-ER1P0CX71 HKR1YDR420W 5409 nt1.28□□□□□ -2.21
TY1A-ER1P0CX71 LAA1YJL207C 6045 nt1.27□□□□□ -2.21
TY1A-ER1P0CX71 RDS3YPR094W 324 nt1.27□□□□□ -2.21
TY1A-ER1P0CX71 YJL077W-AYJL077W-A 87 nt1.26□□□□□ -2.21
TY1A-ER1P0CX71 SIP4YJL089W 2490 nt1.24□□□□□ -2.21
TY1A-ER1P0CX71 NIP1YMR309C 2439 nt1.24□□□□□ -2.21
TY1A-ER1P0CX71 CAT8YMR280C 4302 nt1.21□□□□□ -2.22
TY1A-ER1P0CX71 BUL2YML111W 2763 nt1.21□□□□□ -2.22
TY1A-ER1P0CX71 ORC3YLL004W 1851 nt1.19□□□□□ -2.22
TY1A-ER1P0CX71 NST1YNL091W 3723 nt1.15□□□□□ -2.22
TY1A-ER1P0CX71 PAU12YGR294W 363 nt1.15□□□□□ -2.23
TY1A-ER1P0CX71 tQ(UUG)QtQ(UUG)Q 76 nt1.15□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 28.3 ms