Protein–RNA interactions for Protein: P06839

RAD3, General transcription and DNA repair factor IIH helicase subunit XPD, yeastyeast

Predictions only

Length 778 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RAD3P06839 YPR170W-AYPR170W-A 186 nt0.22□□□□□ -2.37
RAD3P06839 NNF2YGR089W 2811 nt0.22□□□□□ -2.37
RAD3P06839 PRP39YML046W 1890 nt0.21□□□□□ -2.38
RAD3P06839 CSE2YNR010W 450 nt0.21□□□□□ -2.38
RAD3P06839 YDR183C-AYDR183C-A 258 nt0.2□□□□□ -2.38
RAD3P06839 YEL020C-BYEL020C-B 198 nt0.2□□□□□ -2.38
RAD3P06839 YFL063WYFL063W 456 nt0.2□□□□□ -2.38
RAD3P06839 YGL123C-AYGL123C-A 231 nt0.2□□□□□ -2.38
RAD3P06839 YNL146WYNL146W 303 nt0.2□□□□□ -2.38
RAD3P06839 YPR197CYPR197C 564 nt0.2□□□□□ -2.38
RAD3P06839 NIP1YMR309C 2439 nt0.19□□□□□ -2.38
RAD3P06839 YBL100W-BYBL100W-B 5313 nt0.19□□□□□ -2.38
RAD3P06839 YLR041WYLR041W 321 nt0.19□□□□□ -2.38
RAD3P06839 YOL013W-AYOL013W-A 192 nt0.19□□□□□ -2.38
RAD3P06839 snR36snR36 182 nt0.19□□□□□ -2.38
RAD3P06839 YJL197C-AYJL197C-A 282 nt0.18□□□□□ -2.38
RAD3P06839 ATP6Q0085 780 nt0.16□□□□□ -2.38
RAD3P06839 YMR193C-AYMR193C-A 387 nt0.16□□□□□ -2.38
RAD3P06839 snR74snR74 88 nt0.15□□□□□ -2.39
RAD3P06839 YER053C-AYER053C-A 114 nt0.15□□□□□ -2.39
RAD3P06839 YFL032WYFL032W 321 nt0.15□□□□□ -2.39
RAD3P06839 COX12YLR038C 252 nt0.15□□□□□ -2.39
RAD3P06839 TAH1YCR060W 336 nt0.14□□□□□ -2.39
RAD3P06839 YLR120W-AYLR120W-A 102 nt0.14□□□□□ -2.39
RAD3P06839 YLL006W-AYLL006W-A 177 nt0.13□□□□□ -2.39
RAD3P06839 YNL028WYNL028W 318 nt0.13□□□□□ -2.39
RAD3P06839 YEL073CYEL073C 324 nt0.12□□□□□ -2.39
RAD3P06839 YGL149WYGL149W 306 nt0.12□□□□□ -2.39
RAD3P06839 YHR131W-AYHR131W-A 246 nt0.12□□□□□ -2.39
RAD3P06839 YDL240C-AYDL240C-A 138 nt0.11□□□□□ -2.39
RAD3P06839 BLI1YKL061W 342 nt0.11□□□□□ -2.39
RAD3P06839 YPL038W-AYPL038W-A 192 nt0.11□□□□□ -2.39
RAD3P06839 SNU13YEL026W 381 nt0.1□□□□□ -2.39
RAD3P06839 YER097WYER097W 330 nt0.1□□□□□ -2.39
RAD3P06839 YMR172C-AYMR172C-A 384 nt0.1□□□□□ -2.39
RAD3P06839 YDR366CYDR366C 399 nt0.09□□□□□ -2.4
RAD3P06839 YDR413CYDR413C 576 nt0.09□□□□□ -2.4
RAD3P06839 snR45snR45 172 nt0.09□□□□□ -2.4
RAD3P06839 HMRA1YCR097W 381 nt0.08□□□□□ -2.4
RAD3P06839 RAD61YDR014W 1944 nt0.08□□□□□ -2.4
RAD3P06839 SOV1YMR066W 2697 nt0.07□□□□□ -2.4
RAD3P06839 GIM4YEL003W 336 nt0.07□□□□□ -2.4
RAD3P06839 YOR072W-BYOR072W-B 162 nt0.07□□□□□ -2.4
RAD3P06839 YKU70YMR284W 1809 nt0.06□□□□□ -2.4
RAD3P06839 YCR038W-AYCR038W-A 126 nt0.06□□□□□ -2.4
RAD3P06839 YGL052WYGL052W 306 nt0.05□□□□□ -2.4
RAD3P06839 YKL118WYKL118W 312 nt0.05□□□□□ -2.4
RAD3P06839 YKL100W-AYKL100W-A 90 nt0.03□□□□□ -2.4
RAD3P06839 YIL002W-AYIL002W-A 210 nt0.02□□□□□ -2.41
RAD3P06839 YBR072C-AYBR072C-A 162 nt0.01□□□□□ -2.41
RAD3P06839 YOR186C-AYOR186C-A 210 nt0□□□□□ -2.41
RAD3P06839 YPR010C-AYPR010C-A 219 nt0□□□□□ -2.41
RAD3P06839 YHR175W-AYHR175W-A 150 nt-0.02□□□□□ -2.41
RAD3P06839 YMR158W-BYMR158W-B 321 nt-0.02□□□□□ -2.41
RAD3P06839 YIR030W-AYIR030W-A 384 nt-0.03□□□□□ -2.41
RAD3P06839 RPL39YJL189W 156 nt-0.03□□□□□ -2.41
RAD3P06839 YNL277W-AYNL277W-A 189 nt-0.03□□□□□ -2.41
RAD3P06839 SDH6YDR379C-A 240 nt-0.04□□□□□ -2.42
RAD3P06839 tR(ACG)Q2tR(ACG)Q2 74 nt-0.04□□□□□ -2.42
RAD3P06839 APQ12YIL040W 417 nt-0.04□□□□□ -2.42
RAD3P06839 snR56snR56 88 nt-0.06□□□□□ -2.42
RAD3P06839 YDR544CYDR544C 429 nt-0.06□□□□□ -2.42
RAD3P06839 YLR232WYLR232W 348 nt-0.06□□□□□ -2.42
RAD3P06839 tF(GAA)QtF(GAA)Q 75 nt-0.07□□□□□ -2.42
RAD3P06839 YOR008C-AYOR008C-A 225 nt-0.07□□□□□ -2.42
RAD3P06839 YPL060C-AYPL060C-A 3315 nt-0.07□□□□□ -2.42
RAD3P06839 GLG1YKR058W 1851 nt-0.11□□□□□ -2.43
RAD3P06839 YBR099CYBR099C 384 nt-0.11□□□□□ -2.43
RAD3P06839 YBL039C-AYBL039C-A 84 nt-0.12□□□□□ -2.43
RAD3P06839 CSE1YGL238W 2883 nt-0.14□□□□□ -2.43
RAD3P06839 YBR131C-AYBR131C-A 90 nt-0.14□□□□□ -2.43
RAD3P06839 YBR182C-AYBR182C-A 195 nt-0.14□□□□□ -2.43
RAD3P06839 YDR210WYDR210W 228 nt-0.15□□□□□ -2.43
RAD3P06839 YGL041CYGL041C 204 nt-0.15□□□□□ -2.43
RAD3P06839 COG6YNL041C 2520 nt-0.15□□□□□ -2.43
RAD3P06839 EST1YLR233C 2100 nt-0.16□□□□□ -2.43
RAD3P06839 snR128snR128 126 nt-0.16□□□□□ -2.44
RAD3P06839 TFB5YDR079C-A 219 nt-0.17□□□□□ -2.44
RAD3P06839 snR8snR8 190 nt-0.18□□□□□ -2.44
RAD3P06839 YEL014CYEL014C 306 nt-0.2□□□□□ -2.44
RAD3P06839 YML099W-AYML099W-A 330 nt-0.21□□□□□ -2.44
RAD3P06839 YOR314W-AYOR314W-A 111 nt-0.21□□□□□ -2.44
RAD3P06839 snR65snR65 100 nt-0.23□□□□□ -2.45
RAD3P06839 YER181CYER181C 324 nt-0.23□□□□□ -2.45
RAD3P06839 YGL182CYGL182C 324 nt-0.23□□□□□ -2.45
RAD3P06839 snR55snR55 98 nt-0.24□□□□□ -2.45
RAD3P06839 YJL182CYJL182C 318 nt-0.24□□□□□ -2.45
RAD3P06839 YNL097C-BYNL097C-B 123 nt-0.24□□□□□ -2.45
RAD3P06839 snR49snR49 165 nt-0.24□□□□□ -2.45
RAD3P06839 YDR524W-CYDR524W-C 90 nt-0.25□□□□□ -2.45
RAD3P06839 YOR302WYOR302W 78 nt-0.25□□□□□ -2.45
RAD3P06839 YPL152W-AYPL152W-A 99 nt-0.25□□□□□ -2.45
RAD3P06839 YGR164WYGR164W 336 nt-0.27□□□□□ -2.45
RAD3P06839 YOL155W-AYOL155W-A 135 nt-0.31□□□□□ -2.46
RAD3P06839 YOR231C-AYOR231C-A 201 nt-0.31□□□□□ -2.46
RAD3P06839 YOR381W-AYOR381W-A 168 nt-0.31□□□□□ -2.46
RAD3P06839 SBH2YER019C-A 267 nt-0.36□□□□□ -2.47
RAD3P06839 RPM2YML091C 3609 nt-0.37□□□□□ -2.47
RAD3P06839 snR46snR46 197 nt-0.37□□□□□ -2.47
RAD3P06839 snR80snR80 171 nt-0.39□□□□□ -2.47
Retrieved 100 of 7,029 protein–RNA pairs in 6.4 ms