Protein–RNA interactions for Protein: Q6Q5H1

TY1A-PR3, Transposon Ty1-PR3 Gag polyprotein, yeastyeast

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-PR3Q6Q5H1 tL(CAA)G3tL(CAA)G3 82 nt2.03□□□□□ -2.08
TY1A-PR3Q6Q5H1 tL(CAA)KtL(CAA)K 82 nt2.03□□□□□ -2.08
TY1A-PR3Q6Q5H1 tL(CAA)LtL(CAA)L 82 nt2.03□□□□□ -2.08
TY1A-PR3Q6Q5H1 tL(CAA)MtL(CAA)M 82 nt2.03□□□□□ -2.08
TY1A-PR3Q6Q5H1 tL(CAA)NtL(CAA)N 82 nt2.03□□□□□ -2.08
TY1A-PR3Q6Q5H1 INO80YGL150C 4470 nt2.03□□□□□ -2.08
TY1A-PR3Q6Q5H1 TAH1YCR060W 336 nt2.02□□□□□ -2.09
TY1A-PR3Q6Q5H1 STB6YKL072W 2301 nt2.01□□□□□ -2.09
TY1A-PR3Q6Q5H1 YOR161W-AYOR161W-A 81 nt2.01□□□□□ -2.09
TY1A-PR3Q6Q5H1 YML002WYML002W 2214 nt2□□□□□ -2.09
TY1A-PR3Q6Q5H1 YHR180W-AYHR180W-A 183 nt1.99□□□□□ -2.09
TY1A-PR3Q6Q5H1 PAU10YDR542W 363 nt1.98□□□□□ -2.09
TY1A-PR3Q6Q5H1 PAU11YGL261C 363 nt1.98□□□□□ -2.09
TY1A-PR3Q6Q5H1 YHR131W-AYHR131W-A 246 nt1.98□□□□□ -2.09
TY1A-PR3Q6Q5H1 PAU4YLR461W 363 nt1.98□□□□□ -2.09
TY1A-PR3Q6Q5H1 SEC16YPL085W 6588 nt1.98□□□□□ -2.09
TY1A-PR3Q6Q5H1 YAR009CYAR009C 3591 nt1.98□□□□□ -2.09
TY1A-PR3Q6Q5H1 SPP41YDR464W 4308 nt1.98□□□□□ -2.09
TY1A-PR3Q6Q5H1 MYO2YOR326W 4725 nt1.97□□□□□ -2.09
TY1A-PR3Q6Q5H1 SGS1YMR190C 4344 nt1.97□□□□□ -2.09
TY1A-PR3Q6Q5H1 SLX4YLR135W 2247 nt1.97□□□□□ -2.09
TY1A-PR3Q6Q5H1 tM(CAU)Q2tM(CAU)Q2 78 nt1.97□□□□□ -2.09
TY1A-PR3Q6Q5H1 UBP2YOR124C 3819 nt1.96□□□□□ -2.1
TY1A-PR3Q6Q5H1 EAF1YDR359C 2949 nt1.95□□□□□ -2.1
TY1A-PR3Q6Q5H1 ATG9YDL149W 2994 nt1.95□□□□□ -2.1
TY1A-PR3Q6Q5H1 YJL052C-AYJL052C-A 120 nt1.95□□□□□ -2.1
TY1A-PR3Q6Q5H1 PDR8YLR266C 2106 nt1.95□□□□□ -2.1
TY1A-PR3Q6Q5H1 TFC3YAL001C 3483 nt1.95□□□□□ -2.1
TY1A-PR3Q6Q5H1 MGA2YIR033W 3342 nt1.94□□□□□ -2.1
TY1A-PR3Q6Q5H1 DGR1YNL130C-A 147 nt1.94□□□□□ -2.1
TY1A-PR3Q6Q5H1 snR39BsnR39B 96 nt1.94□□□□□ -2.1
TY1A-PR3Q6Q5H1 USO1YDL058W 5373 nt1.94□□□□□ -2.1
TY1A-PR3Q6Q5H1 RGA1YOR127W 3024 nt1.93□□□□□ -2.1
TY1A-PR3Q6Q5H1 YGL063C-AYGL063C-A 150 nt1.93□□□□□ -2.1
TY1A-PR3Q6Q5H1 SEC21YNL287W 2808 nt1.92□□□□□ -2.1
TY1A-PR3Q6Q5H1 UBR2YLR024C 5619 nt1.92□□□□□ -2.1
TY1A-PR3Q6Q5H1 DBP10YDL031W 2988 nt1.92□□□□□ -2.1
TY1A-PR3Q6Q5H1 MSB1YOR188W 3414 nt1.92□□□□□ -2.1
TY1A-PR3Q6Q5H1 RTP1YMR185W 2946 nt1.91□□□□□ -2.1
TY1A-PR3Q6Q5H1 SMC4YLR086W 4257 nt1.91□□□□□ -2.1
TY1A-PR3Q6Q5H1 SKI3YPR189W 4299 nt1.91□□□□□ -2.1
TY1A-PR3Q6Q5H1 YLR232WYLR232W 348 nt1.9□□□□□ -2.11
TY1A-PR3Q6Q5H1 SEC31YDL195W 3822 nt1.9□□□□□ -2.11
TY1A-PR3Q6Q5H1 YIL142C-AYIL142C-A 333 nt1.89□□□□□ -2.11
TY1A-PR3Q6Q5H1 NOP9YJL010C 2001 nt1.89□□□□□ -2.11
TY1A-PR3Q6Q5H1 YLR422WYLR422W 5799 nt1.88□□□□□ -2.11
TY1A-PR3Q6Q5H1 snR14snR14 160 nt1.88□□□□□ -2.11
TY1A-PR3Q6Q5H1 FYV10YIL097W 1551 nt1.88□□□□□ -2.11
TY1A-PR3Q6Q5H1 UFD4YKL010C 4452 nt1.88□□□□□ -2.11
TY1A-PR3Q6Q5H1 tF(GAA)DtF(GAA)D 73 nt1.87□□□□□ -2.11
TY1A-PR3Q6Q5H1 tF(GAA)NtF(GAA)N 73 nt1.87□□□□□ -2.11
TY1A-PR3Q6Q5H1 PDR3YBL005W 2931 nt1.87□□□□□ -2.11
TY1A-PR3Q6Q5H1 YCS4YLR272C 3531 nt1.86□□□□□ -2.11
TY1A-PR3Q6Q5H1 YLR041WYLR041W 321 nt1.86□□□□□ -2.11
TY1A-PR3Q6Q5H1 CHS1YNL192W 3396 nt1.85□□□□□ -2.11
TY1A-PR3Q6Q5H1 TOR2YKL203C 7425 nt1.85□□□□□ -2.11
TY1A-PR3Q6Q5H1 STO1YMR125W 2586 nt1.85□□□□□ -2.11
TY1A-PR3Q6Q5H1 RPL26BYGR034W 384 nt1.85□□□□□ -2.11
TY1A-PR3Q6Q5H1 YJL127W-AYJL127W-A 117 nt1.85□□□□□ -2.11
TY1A-PR3Q6Q5H1 snR190snR190 190 nt1.85□□□□□ -2.11
TY1A-PR3Q6Q5H1 SCD5YOR329C 2619 nt1.85□□□□□ -2.11
TY1A-PR3Q6Q5H1 ROM2YLR371W 4071 nt1.84□□□□□ -2.11
TY1A-PR3Q6Q5H1 WAR1YML076C 2835 nt1.84□□□□□ -2.12
TY1A-PR3Q6Q5H1 NEO1YIL048W 3456 nt1.83□□□□□ -2.12
TY1A-PR3Q6Q5H1 KCS1YDR017C 3153 nt1.83□□□□□ -2.12
TY1A-PR3Q6Q5H1 KAP122YGL016W 3246 nt1.82□□□□□ -2.12
TY1A-PR3Q6Q5H1 RCO1YMR075W 2055 nt1.82□□□□□ -2.12
TY1A-PR3Q6Q5H1 SET3YKR029C 2256 nt1.82□□□□□ -2.12
TY1A-PR3Q6Q5H1 PDR11YIL013C 4236 nt1.81□□□□□ -2.12
TY1A-PR3Q6Q5H1 APL3YBL037W 3078 nt1.81□□□□□ -2.12
TY1A-PR3Q6Q5H1 tS(GCU)Q1tS(GCU)Q1 86 nt1.81□□□□□ -2.12
TY1A-PR3Q6Q5H1 TMA7YLR262C-A 195 nt1.81□□□□□ -2.12
TY1A-PR3Q6Q5H1 KAP120YPL125W 3099 nt1.81□□□□□ -2.12
TY1A-PR3Q6Q5H1 BPH1YCR032W 6504 nt1.8□□□□□ -2.12
TY1A-PR3Q6Q5H1 YHR214C-BYHR214C-B 5382 nt1.8□□□□□ -2.12
TY1A-PR3Q6Q5H1 CDC25YLR310C 4770 nt1.8□□□□□ -2.12
TY1A-PR3Q6Q5H1 BIR1YJR089W 2865 nt1.78□□□□□ -2.12
TY1A-PR3Q6Q5H1 YDR210WYDR210W 228 nt1.78□□□□□ -2.12
TY1A-PR3Q6Q5H1 YGR146C-AYGR146C-A 162 nt1.78□□□□□ -2.12
TY1A-PR3Q6Q5H1 YLL066W-BYLL066W-B 171 nt1.78□□□□□ -2.12
TY1A-PR3Q6Q5H1 RPM2YML091C 3609 nt1.77□□□□□ -2.13
TY1A-PR3Q6Q5H1 NUP157YER105C 4176 nt1.77□□□□□ -2.13
TY1A-PR3Q6Q5H1 YNL266WYNL266W 420 nt1.76□□□□□ -2.13
TY1A-PR3Q6Q5H1 YOL019W-AYOL019W-A 153 nt1.76□□□□□ -2.13
TY1A-PR3Q6Q5H1 YMR045CYMR045C 5268 nt1.75□□□□□ -2.13
TY1A-PR3Q6Q5H1 GEA2YEL022W 4380 nt1.75□□□□□ -2.13
TY1A-PR3Q6Q5H1 FKS3YMR306W 5358 nt1.75□□□□□ -2.13
TY1A-PR3Q6Q5H1 snR81snR81 201 nt1.75□□□□□ -2.13
TY1A-PR3Q6Q5H1 YBR200W-AYBR200W-A 165 nt1.75□□□□□ -2.13
TY1A-PR3Q6Q5H1 BRE1YDL074C 2103 nt1.75□□□□□ -2.13
TY1A-PR3Q6Q5H1 IRC20YLR247C 4671 nt1.74□□□□□ -2.13
TY1A-PR3Q6Q5H1 SEC1YDR164C 2175 nt1.74□□□□□ -2.13
TY1A-PR3Q6Q5H1 COG6YNL041C 2520 nt1.73□□□□□ -2.13
TY1A-PR3Q6Q5H1 tW(CCA)G1tW(CCA)G1 72 nt1.73□□□□□ -2.13
TY1A-PR3Q6Q5H1 tW(CCA)G2tW(CCA)G2 72 nt1.73□□□□□ -2.13
TY1A-PR3Q6Q5H1 tW(CCA)JtW(CCA)J 72 nt1.73□□□□□ -2.13
TY1A-PR3Q6Q5H1 tW(CCA)KtW(CCA)K 72 nt1.73□□□□□ -2.13
TY1A-PR3Q6Q5H1 tW(CCA)MtW(CCA)M 72 nt1.73□□□□□ -2.13
TY1A-PR3Q6Q5H1 tW(CCA)PtW(CCA)P 72 nt1.73□□□□□ -2.13
TY1A-PR3Q6Q5H1 YAL037C-AYAL037C-A 93 nt1.73□□□□□ -2.13
Retrieved 100 of 7,029 protein–RNA pairs in 32 ms