Protein–RNA interactions for Protein: P0CX75

TY1A-LR3, Transposon Ty1-LR3 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-LR3P0CX75 tL(CAA)G3tL(CAA)G3 82 nt2.03□□□□□ -2.08
TY1A-LR3P0CX75 tL(CAA)KtL(CAA)K 82 nt2.03□□□□□ -2.08
TY1A-LR3P0CX75 tL(CAA)LtL(CAA)L 82 nt2.03□□□□□ -2.08
TY1A-LR3P0CX75 tL(CAA)MtL(CAA)M 82 nt2.03□□□□□ -2.08
TY1A-LR3P0CX75 tL(CAA)NtL(CAA)N 82 nt2.03□□□□□ -2.08
TY1A-LR3P0CX75 INO80YGL150C 4470 nt2.03□□□□□ -2.08
TY1A-LR3P0CX75 TAH1YCR060W 336 nt2.02□□□□□ -2.09
TY1A-LR3P0CX75 STB6YKL072W 2301 nt2.01□□□□□ -2.09
TY1A-LR3P0CX75 YOR161W-AYOR161W-A 81 nt2.01□□□□□ -2.09
TY1A-LR3P0CX75 YML002WYML002W 2214 nt2□□□□□ -2.09
TY1A-LR3P0CX75 YHR180W-AYHR180W-A 183 nt1.99□□□□□ -2.09
TY1A-LR3P0CX75 PAU10YDR542W 363 nt1.98□□□□□ -2.09
TY1A-LR3P0CX75 PAU11YGL261C 363 nt1.98□□□□□ -2.09
TY1A-LR3P0CX75 YHR131W-AYHR131W-A 246 nt1.98□□□□□ -2.09
TY1A-LR3P0CX75 PAU4YLR461W 363 nt1.98□□□□□ -2.09
TY1A-LR3P0CX75 SEC16YPL085W 6588 nt1.98□□□□□ -2.09
TY1A-LR3P0CX75 YAR009CYAR009C 3591 nt1.98□□□□□ -2.09
TY1A-LR3P0CX75 SPP41YDR464W 4308 nt1.98□□□□□ -2.09
TY1A-LR3P0CX75 MYO2YOR326W 4725 nt1.97□□□□□ -2.09
TY1A-LR3P0CX75 SGS1YMR190C 4344 nt1.97□□□□□ -2.09
TY1A-LR3P0CX75 SLX4YLR135W 2247 nt1.97□□□□□ -2.09
TY1A-LR3P0CX75 tM(CAU)Q2tM(CAU)Q2 78 nt1.97□□□□□ -2.09
TY1A-LR3P0CX75 UBP2YOR124C 3819 nt1.96□□□□□ -2.1
TY1A-LR3P0CX75 EAF1YDR359C 2949 nt1.95□□□□□ -2.1
TY1A-LR3P0CX75 ATG9YDL149W 2994 nt1.95□□□□□ -2.1
TY1A-LR3P0CX75 YJL052C-AYJL052C-A 120 nt1.95□□□□□ -2.1
TY1A-LR3P0CX75 PDR8YLR266C 2106 nt1.95□□□□□ -2.1
TY1A-LR3P0CX75 TFC3YAL001C 3483 nt1.95□□□□□ -2.1
TY1A-LR3P0CX75 MGA2YIR033W 3342 nt1.94□□□□□ -2.1
TY1A-LR3P0CX75 DGR1YNL130C-A 147 nt1.94□□□□□ -2.1
TY1A-LR3P0CX75 snR39BsnR39B 96 nt1.94□□□□□ -2.1
TY1A-LR3P0CX75 USO1YDL058W 5373 nt1.94□□□□□ -2.1
TY1A-LR3P0CX75 RGA1YOR127W 3024 nt1.93□□□□□ -2.1
TY1A-LR3P0CX75 YGL063C-AYGL063C-A 150 nt1.93□□□□□ -2.1
TY1A-LR3P0CX75 SEC21YNL287W 2808 nt1.92□□□□□ -2.1
TY1A-LR3P0CX75 UBR2YLR024C 5619 nt1.92□□□□□ -2.1
TY1A-LR3P0CX75 DBP10YDL031W 2988 nt1.92□□□□□ -2.1
TY1A-LR3P0CX75 MSB1YOR188W 3414 nt1.92□□□□□ -2.1
TY1A-LR3P0CX75 RTP1YMR185W 2946 nt1.91□□□□□ -2.1
TY1A-LR3P0CX75 SMC4YLR086W 4257 nt1.91□□□□□ -2.1
TY1A-LR3P0CX75 SKI3YPR189W 4299 nt1.91□□□□□ -2.1
TY1A-LR3P0CX75 YLR232WYLR232W 348 nt1.9□□□□□ -2.11
TY1A-LR3P0CX75 SEC31YDL195W 3822 nt1.9□□□□□ -2.11
TY1A-LR3P0CX75 YIL142C-AYIL142C-A 333 nt1.89□□□□□ -2.11
TY1A-LR3P0CX75 NOP9YJL010C 2001 nt1.89□□□□□ -2.11
TY1A-LR3P0CX75 YLR422WYLR422W 5799 nt1.88□□□□□ -2.11
TY1A-LR3P0CX75 snR14snR14 160 nt1.88□□□□□ -2.11
TY1A-LR3P0CX75 FYV10YIL097W 1551 nt1.88□□□□□ -2.11
TY1A-LR3P0CX75 UFD4YKL010C 4452 nt1.88□□□□□ -2.11
TY1A-LR3P0CX75 tF(GAA)DtF(GAA)D 73 nt1.87□□□□□ -2.11
TY1A-LR3P0CX75 tF(GAA)NtF(GAA)N 73 nt1.87□□□□□ -2.11
TY1A-LR3P0CX75 PDR3YBL005W 2931 nt1.87□□□□□ -2.11
TY1A-LR3P0CX75 YCS4YLR272C 3531 nt1.86□□□□□ -2.11
TY1A-LR3P0CX75 YLR041WYLR041W 321 nt1.86□□□□□ -2.11
TY1A-LR3P0CX75 CHS1YNL192W 3396 nt1.85□□□□□ -2.11
TY1A-LR3P0CX75 TOR2YKL203C 7425 nt1.85□□□□□ -2.11
TY1A-LR3P0CX75 STO1YMR125W 2586 nt1.85□□□□□ -2.11
TY1A-LR3P0CX75 RPL26BYGR034W 384 nt1.85□□□□□ -2.11
TY1A-LR3P0CX75 YJL127W-AYJL127W-A 117 nt1.85□□□□□ -2.11
TY1A-LR3P0CX75 snR190snR190 190 nt1.85□□□□□ -2.11
TY1A-LR3P0CX75 SCD5YOR329C 2619 nt1.85□□□□□ -2.11
TY1A-LR3P0CX75 ROM2YLR371W 4071 nt1.84□□□□□ -2.11
TY1A-LR3P0CX75 WAR1YML076C 2835 nt1.84□□□□□ -2.12
TY1A-LR3P0CX75 NEO1YIL048W 3456 nt1.83□□□□□ -2.12
TY1A-LR3P0CX75 KCS1YDR017C 3153 nt1.83□□□□□ -2.12
TY1A-LR3P0CX75 KAP122YGL016W 3246 nt1.82□□□□□ -2.12
TY1A-LR3P0CX75 RCO1YMR075W 2055 nt1.82□□□□□ -2.12
TY1A-LR3P0CX75 SET3YKR029C 2256 nt1.82□□□□□ -2.12
TY1A-LR3P0CX75 PDR11YIL013C 4236 nt1.81□□□□□ -2.12
TY1A-LR3P0CX75 APL3YBL037W 3078 nt1.81□□□□□ -2.12
TY1A-LR3P0CX75 tS(GCU)Q1tS(GCU)Q1 86 nt1.81□□□□□ -2.12
TY1A-LR3P0CX75 TMA7YLR262C-A 195 nt1.81□□□□□ -2.12
TY1A-LR3P0CX75 KAP120YPL125W 3099 nt1.81□□□□□ -2.12
TY1A-LR3P0CX75 BPH1YCR032W 6504 nt1.8□□□□□ -2.12
TY1A-LR3P0CX75 YHR214C-BYHR214C-B 5382 nt1.8□□□□□ -2.12
TY1A-LR3P0CX75 CDC25YLR310C 4770 nt1.8□□□□□ -2.12
TY1A-LR3P0CX75 BIR1YJR089W 2865 nt1.78□□□□□ -2.12
TY1A-LR3P0CX75 YDR210WYDR210W 228 nt1.78□□□□□ -2.12
TY1A-LR3P0CX75 YGR146C-AYGR146C-A 162 nt1.78□□□□□ -2.12
TY1A-LR3P0CX75 YLL066W-BYLL066W-B 171 nt1.78□□□□□ -2.12
TY1A-LR3P0CX75 RPM2YML091C 3609 nt1.77□□□□□ -2.13
TY1A-LR3P0CX75 NUP157YER105C 4176 nt1.77□□□□□ -2.13
TY1A-LR3P0CX75 YNL266WYNL266W 420 nt1.76□□□□□ -2.13
TY1A-LR3P0CX75 YOL019W-AYOL019W-A 153 nt1.76□□□□□ -2.13
TY1A-LR3P0CX75 YMR045CYMR045C 5268 nt1.75□□□□□ -2.13
TY1A-LR3P0CX75 GEA2YEL022W 4380 nt1.75□□□□□ -2.13
TY1A-LR3P0CX75 FKS3YMR306W 5358 nt1.75□□□□□ -2.13
TY1A-LR3P0CX75 snR81snR81 201 nt1.75□□□□□ -2.13
TY1A-LR3P0CX75 YBR200W-AYBR200W-A 165 nt1.75□□□□□ -2.13
TY1A-LR3P0CX75 BRE1YDL074C 2103 nt1.75□□□□□ -2.13
TY1A-LR3P0CX75 IRC20YLR247C 4671 nt1.74□□□□□ -2.13
TY1A-LR3P0CX75 SEC1YDR164C 2175 nt1.74□□□□□ -2.13
TY1A-LR3P0CX75 COG6YNL041C 2520 nt1.73□□□□□ -2.13
TY1A-LR3P0CX75 tW(CCA)G1tW(CCA)G1 72 nt1.73□□□□□ -2.13
TY1A-LR3P0CX75 tW(CCA)G2tW(CCA)G2 72 nt1.73□□□□□ -2.13
TY1A-LR3P0CX75 tW(CCA)JtW(CCA)J 72 nt1.73□□□□□ -2.13
TY1A-LR3P0CX75 tW(CCA)KtW(CCA)K 72 nt1.73□□□□□ -2.13
TY1A-LR3P0CX75 tW(CCA)MtW(CCA)M 72 nt1.73□□□□□ -2.13
TY1A-LR3P0CX75 tW(CCA)PtW(CCA)P 72 nt1.73□□□□□ -2.13
TY1A-LR3P0CX75 YAL037C-AYAL037C-A 93 nt1.73□□□□□ -2.13
Retrieved 100 of 7,029 protein–RNA pairs in 127.1 ms