Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
ABCA4P78363 AL390719.1-204ENST00000412397 1219 ntBASIC17.31■□□□□ 0.36
ABCA4P78363 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.31■□□□□ 0.36
ABCA4P78363 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.31■□□□□ 0.36
ABCA4P78363 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.31■□□□□ 0.36
ABCA4P78363 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ABCA4P78363 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.31■□□□□ 0.36
ABCA4P78363 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ABCA4P78363 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCA4P78363 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
ABCA4P78363 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ABCA4P78363 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCA4P78363 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCA4P78363 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ABCA4P78363 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
ABCA4P78363 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCA4P78363 Z98882.1-201ENST00000622160 2253 ntBASIC17.3■□□□□ 0.36
ABCA4P78363 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
ABCA4P78363 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.3■□□□□ 0.36
ABCA4P78363 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.3■□□□□ 0.36
ABCA4P78363 AL121906.2-201ENST00000621597 723 ntBASIC17.3■□□□□ 0.36
ABCA4P78363 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.3■□□□□ 0.36
ABCA4P78363 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCA4P78363 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.29■□□□□ 0.36
ABCA4P78363 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC17.29■□□□□ 0.36
ABCA4P78363 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA4P78363 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
ABCA4P78363 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA4P78363 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.29■□□□□ 0.36
ABCA4P78363 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 AC113347.1-201ENST00000413321 391 ntBASIC17.29■□□□□ 0.36
ABCA4P78363 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 AC145285.6-201ENST00000604632 637 ntBASIC17.29■□□□□ 0.36
ABCA4P78363 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ABCA4P78363 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCA4P78363 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCA4P78363 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA4P78363 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA4P78363 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCA4P78363 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA4P78363 KRT18P57-201ENST00000443599 1254 ntBASIC17.28■□□□□ 0.36
ABCA4P78363 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
ABCA4P78363 MIR6786-201ENST00000616843 113 ntBASIC17.28■□□□□ 0.36
ABCA4P78363 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA4P78363 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA4P78363 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA4P78363 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
ABCA4P78363 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCA4P78363 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA4P78363 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA4P78363 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA4P78363 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCA4P78363 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA4P78363 AL390955.1-201ENST00000428694 934 ntBASIC17.28■□□□□ 0.36
ABCA4P78363 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
ABCA4P78363 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ABCA4P78363 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCA4P78363 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
ABCA4P78363 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
ABCA4P78363 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
ABCA4P78363 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.27■□□□□ 0.36
ABCA4P78363 AC116562.2-201ENST00000507042 360 ntBASIC17.27■□□□□ 0.36
ABCA4P78363 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.27■□□□□ 0.36
ABCA4P78363 C2orf69P3-201ENST00000565542 1120 ntBASIC17.27■□□□□ 0.36
ABCA4P78363 AC026471.5-201ENST00000615068 467 ntBASIC17.27■□□□□ 0.36
ABCA4P78363 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
ABCA4P78363 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
ABCA4P78363 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.27■□□□□ 0.36
ABCA4P78363 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCA4P78363 AF106564.1-201ENST00000607058 2553 ntBASIC17.27■□□□□ 0.36
ABCA4P78363 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.27■□□□□ 0.35
ABCA4P78363 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.27■□□□□ 0.35
ABCA4P78363 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 403.4 ms