Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YJL015CYJL015C 285 nt1.87□□□□□ -2.11
RPN11P43588 YML007C-AYML007C-A 111 nt1.87□□□□□ -2.11
RPN11P43588 FMP23YBR047W 528 nt1.87□□□□□ -2.11
RPN11P43588 TFC8YPL007C 1767 nt1.87□□□□□ -2.11
RPN11P43588 ZRG17YNR039C 1818 nt1.87□□□□□ -2.11
RPN11P43588 RFX1YLR176C 2436 nt1.86□□□□□ -2.11
RPN11P43588 TTI1YKL033W 3117 nt1.86□□□□□ -2.11
RPN11P43588 snR65snR65 100 nt1.86□□□□□ -2.11
RPN11P43588 IRE1YHR079C 3348 nt1.86□□□□□ -2.11
RPN11P43588 RIM20YOR275C 1986 nt1.85□□□□□ -2.11
RPN11P43588 YGL149WYGL149W 306 nt1.85□□□□□ -2.11
RPN11P43588 RPL39YJL189W 156 nt1.85□□□□□ -2.11
RPN11P43588 MSC6YOR354C 2079 nt1.85□□□□□ -2.11
RPN11P43588 FIG2YCR089W 4830 nt1.85□□□□□ -2.11
RPN11P43588 MON2YNL297C 4911 nt1.84□□□□□ -2.11
RPN11P43588 NPC2YDL046W 522 nt1.84□□□□□ -2.11
RPN11P43588 ZIP1YDR285W 2628 nt1.84□□□□□ -2.12
RPN11P43588 RTP1YMR185W 2946 nt1.84□□□□□ -2.12
RPN11P43588 YHR071C-AYHR071C-A 321 nt1.83□□□□□ -2.12
RPN11P43588 PCC1YKR095W-A 267 nt1.83□□□□□ -2.12
RPN11P43588 RPL38YLR325C 237 nt1.83□□□□□ -2.12
RPN11P43588 YOR282WYOR282W 321 nt1.83□□□□□ -2.12
RPN11P43588 YPR002C-AYPR002C-A 198 nt1.83□□□□□ -2.12
RPN11P43588 MYO2YOR326W 4725 nt1.83□□□□□ -2.12
RPN11P43588 MUK1YPL070W 1839 nt1.82□□□□□ -2.12
RPN11P43588 YGR250CYGR250C 2346 nt1.82□□□□□ -2.12
RPN11P43588 YER088C-AYER088C-A 324 nt1.82□□□□□ -2.12
RPN11P43588 INA22YIR024C 651 nt1.82□□□□□ -2.12
RPN11P43588 ADR1YDR216W 3972 nt1.82□□□□□ -2.12
RPN11P43588 YLL032CYLL032C 2478 nt1.81□□□□□ -2.12
RPN11P43588 SLY1YDR189W 2001 nt1.81□□□□□ -2.12
RPN11P43588 YLR035C-AYLR035C-A 3468 nt1.81□□□□□ -2.12
RPN11P43588 MAK10YEL053C 2202 nt1.81□□□□□ -2.12
RPN11P43588 IML1YJR138W 4755 nt1.81□□□□□ -2.12
RPN11P43588 FRK1YPL141C 2598 nt1.8□□□□□ -2.12
RPN11P43588 VPS54YDR027C 2670 nt1.8□□□□□ -2.12
RPN11P43588 RLM1YPL089C 2031 nt1.8□□□□□ -2.12
RPN11P43588 HCS1YKL017C 2052 nt1.8□□□□□ -2.12
RPN11P43588 YIL115W-AYIL115W-A 372 nt1.8□□□□□ -2.12
RPN11P43588 INP2YMR163C 2118 nt1.8□□□□□ -2.12
RPN11P43588 PIK1YNL267W 3201 nt1.79□□□□□ -2.12
RPN11P43588 IRR1YIL026C 3453 nt1.79□□□□□ -2.12
RPN11P43588 YGR265WYGR265W 411 nt1.79□□□□□ -2.12
RPN11P43588 YIL032CYIL032C 357 nt1.79□□□□□ -2.12
RPN11P43588 CTR9YOL145C 3234 nt1.78□□□□□ -2.12
RPN11P43588 snR60snR60 104 nt1.78□□□□□ -2.12
RPN11P43588 SDH2YLL041C 801 nt1.78□□□□□ -2.12
RPN11P43588 AGC1YPR021C 2709 nt1.78□□□□□ -2.12
RPN11P43588 CLU1YMR012W 3834 nt1.78□□□□□ -2.13
RPN11P43588 HMI1YOL095C 2121 nt1.78□□□□□ -2.13
RPN11P43588 AI5_ALPHAQ0070 1893 nt1.77□□□□□ -2.13
RPN11P43588 HTL1YCR020W-B 237 nt1.77□□□□□ -2.13
RPN11P43588 tH(GUG)E1tH(GUG)E1 72 nt1.77□□□□□ -2.13
RPN11P43588 tH(GUG)E2tH(GUG)E2 72 nt1.77□□□□□ -2.13
RPN11P43588 tH(GUG)G1tH(GUG)G1 72 nt1.77□□□□□ -2.13
RPN11P43588 tH(GUG)G2tH(GUG)G2 72 nt1.77□□□□□ -2.13
RPN11P43588 tH(GUG)HtH(GUG)H 72 nt1.77□□□□□ -2.13
RPN11P43588 tH(GUG)KtH(GUG)K 72 nt1.77□□□□□ -2.13
RPN11P43588 tH(GUG)MtH(GUG)M 72 nt1.77□□□□□ -2.13
RPN11P43588 YGR069WYGR069W 336 nt1.77□□□□□ -2.13
RPN11P43588 YMR290W-AYMR290W-A 348 nt1.77□□□□□ -2.13
RPN11P43588 SSS1YDR086C 243 nt1.76□□□□□ -2.13
RPN11P43588 TMA7YLR262C-A 195 nt1.76□□□□□ -2.13
RPN11P43588 PKH3YDR466W 2697 nt1.75□□□□□ -2.13
RPN11P43588 SAS3YBL052C 2496 nt1.75□□□□□ -2.13
RPN11P43588 MLH3YPL164C 2148 nt1.75□□□□□ -2.13
RPN11P43588 YDR182W-AYDR182W-A 204 nt1.74□□□□□ -2.13
RPN11P43588 ELG1YOR144C 2376 nt1.74□□□□□ -2.13
RPN11P43588 YPR063CYPR063C 423 nt1.73□□□□□ -2.13
RPN11P43588 TBS1YBR150C 3285 nt1.73□□□□□ -2.13
RPN11P43588 SEC63YOR254C 1992 nt1.72□□□□□ -2.13
RPN11P43588 RAD61YDR014W 1944 nt1.72□□□□□ -2.13
RPN11P43588 PAU3YCR104W 375 nt1.72□□□□□ -2.13
RPN11P43588 YDR344CYDR344C 444 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)BtF(GAA)B 73 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)FtF(GAA)F 73 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)GtF(GAA)G 73 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)H1tF(GAA)H1 73 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)H2tF(GAA)H2 73 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)MtF(GAA)M 73 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)P1tF(GAA)P1 73 nt1.72□□□□□ -2.13
RPN11P43588 tF(GAA)P2tF(GAA)P2 73 nt1.72□□□□□ -2.13
RPN11P43588 YAR009CYAR009C 3591 nt1.71□□□□□ -2.14
RPN11P43588 ZIP2YGL249W 2115 nt1.71□□□□□ -2.14
RPN11P43588 LHS1YKL073W 2646 nt1.71□□□□□ -2.14
RPN11P43588 YDR366CYDR366C 399 nt1.7□□□□□ -2.14
RPN11P43588 YMR242W-AYMR242W-A 90 nt1.7□□□□□ -2.14
RPN11P43588 SPT21YMR179W 2277 nt1.7□□□□□ -2.14
RPN11P43588 YHL042WYHL042W 453 nt1.69□□□□□ -2.14
RPN11P43588 YPL152W-AYPL152W-A 99 nt1.69□□□□□ -2.14
RPN11P43588 MPT5YGL178W 2580 nt1.69□□□□□ -2.14
RPN11P43588 SMC4YLR086W 4257 nt1.69□□□□□ -2.14
RPN11P43588 MEC1YBR136W 7107 nt1.68□□□□□ -2.14
RPN11P43588 YDL211CYDL211C 1119 nt1.68□□□□□ -2.14
RPN11P43588 ALG13YGL047W 609 nt1.68□□□□□ -2.14
RPN11P43588 YOL160WYOL160W 342 nt1.68□□□□□ -2.14
RPN11P43588 DGR2YKL121W 2559 nt1.68□□□□□ -2.14
RPN11P43588 SPC98YNL126W 2541 nt1.68□□□□□ -2.14
RPN11P43588 PIG1YLR273C 1947 nt1.68□□□□□ -2.14
RPN11P43588 UTP21YLR409C 2820 nt1.67□□□□□ -2.14
Retrieved 100 of 7,029 protein–RNA pairs in 17.9 ms