Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 IRC19YLL033W 693 nt2.59□□□□□ -1.99
RPN11P43588 YAR047CYAR047C 321 nt2.59□□□□□ -1.99
RPN11P43588 YOL134CYOL134C 390 nt2.59□□□□□ -1.99
RPN11P43588 BNA4YBL098W 1383 nt2.59□□□□□ -2
RPN11P43588 ESC1YMR219W 4977 nt2.59□□□□□ -2
RPN11P43588 YLR278CYLR278C 4026 nt2.58□□□□□ -2
RPN11P43588 NOP19YGR251W 591 nt2.58□□□□□ -2
RPN11P43588 RRF1YHR038W 693 nt2.58□□□□□ -2
RPN11P43588 YPR039WYPR039W 336 nt2.58□□□□□ -2
RPN11P43588 DBP7YKR024C 2229 nt2.58□□□□□ -2
RPN11P43588 SNX41YDR425W 1878 nt2.58□□□□□ -2
RPN11P43588 RSN1YMR266W 2862 nt2.57□□□□□ -2
RPN11P43588 DYN2YDR424C 279 nt2.57□□□□□ -2
RPN11P43588 YER188C-AYER188C-A 300 nt2.57□□□□□ -2
RPN11P43588 YLR154W-EYLR154W-E 204 nt2.57□□□□□ -2
RPN11P43588 UTP14YML093W 2700 nt2.57□□□□□ -2
RPN11P43588 YEF3YLR249W 3135 nt2.57□□□□□ -2
RPN11P43588 NIC96YFR002W 2520 nt2.57□□□□□ -2
RPN11P43588 TPS2YDR074W 2691 nt2.56□□□□□ -2
RPN11P43588 SKT5YBL061C 2091 nt2.56□□□□□ -2
RPN11P43588 YGL014C-AYGL014C-A 162 nt2.56□□□□□ -2
RPN11P43588 STF2YGR008C 255 nt2.56□□□□□ -2
RPN11P43588 PET191YJR034W 327 nt2.56□□□□□ -2
RPN11P43588 RGM1YMR182C 636 nt2.56□□□□□ -2
RPN11P43588 RPL36AYMR194W 303 nt2.56□□□□□ -2
RPN11P43588 snR13snR13 124 nt2.56□□□□□ -2
RPN11P43588 SLM6YBR266C 453 nt2.56□□□□□ -2
RPN11P43588 LYS9YNR050C 1341 nt2.56□□□□□ -2
RPN11P43588 STH1YIL126W 4080 nt2.55□□□□□ -2
RPN11P43588 YER189WYER189W 369 nt2.55□□□□□ -2
RPN11P43588 JSN1YJR091C 3276 nt2.55□□□□□ -2
RPN11P43588 YPK1YKL126W 2043 nt2.55□□□□□ -2
RPN11P43588 PSO2YMR137C 1986 nt2.55□□□□□ -2
RPN11P43588 ZEO1YOL109W 342 nt2.55□□□□□ -2
RPN11P43588 YOR053WYOR053W 342 nt2.55□□□□□ -2
RPN11P43588 ASG1YIL130W 2895 nt2.55□□□□□ -2
RPN11P43588 snR76snR76 109 nt2.54□□□□□ -2
RPN11P43588 ATG31YDR022C 591 nt2.54□□□□□ -2
RPN11P43588 YHL037CYHL037C 402 nt2.54□□□□□ -2
RPN11P43588 YHR214W-AYHR214W-A 486 nt2.54□□□□□ -2
RPN11P43588 tT(UGU)Q1tT(UGU)Q1 76 nt2.54□□□□□ -2
RPN11P43588 YAR068WYAR068W 486 nt2.54□□□□□ -2
RPN11P43588 MF(ALPHA)1YPL187W 498 nt2.54□□□□□ -2
RPN11P43588 YPR203WYPR203W 309 nt2.54□□□□□ -2
RPN11P43588 MYO4YAL029C 4416 nt2.54□□□□□ -2
RPN11P43588 NUP82YJL061W 2142 nt2.53□□□□□ -2
RPN11P43588 DAS1YJL149W 1992 nt2.53□□□□□ -2
RPN11P43588 YGL024WYGL024W 336 nt2.53□□□□□ -2
RPN11P43588 NCE101YJL205C 162 nt2.53□□□□□ -2
RPN11P43588 YAL068W-AYAL068W-A 255 nt2.53□□□□□ -2
RPN11P43588 PEX17YNL214W 600 nt2.53□□□□□ -2
RPN11P43588 YOR029WYOR029W 336 nt2.53□□□□□ -2
RPN11P43588 YOR105WYOR105W 327 nt2.53□□□□□ -2
RPN11P43588 SSN2YDR443C 4263 nt2.53□□□□□ -2
RPN11P43588 GEA1YJR031C 4227 nt2.53□□□□□ -2.01
RPN11P43588 FIR1YER032W 2631 nt2.53□□□□□ -2.01
RPN11P43588 NFT1YKR103W 3657 nt2.53□□□□□ -2.01
RPN11P43588 BRO1YPL084W 2535 nt2.52□□□□□ -2.01
RPN11P43588 MET6YER091C 2304 nt2.52□□□□□ -2.01
RPN11P43588 RBK1YCR036W 1002 nt2.52□□□□□ -2.01
RPN11P43588 CBS1YDL069C 690 nt2.52□□□□□ -2.01
RPN11P43588 YBR012CYBR012C 420 nt2.52□□□□□ -2.01
RPN11P43588 BAS1YKR099W 2436 nt2.52□□□□□ -2.01
RPN11P43588 YJL181WYJL181W 1836 nt2.52□□□□□ -2.01
RPN11P43588 SDH7YDR511W 402 nt2.51□□□□□ -2.01
RPN11P43588 YHL046W-AYHL046W-A 327 nt2.51□□□□□ -2.01
RPN11P43588 YJL052C-AYJL052C-A 120 nt2.51□□□□□ -2.01
RPN11P43588 RPS1AYLR441C 768 nt2.51□□□□□ -2.01
RPN11P43588 YBR197CYBR197C 654 nt2.51□□□□□ -2.01
RPN11P43588 KOG1YHR186C 4674 nt2.51□□□□□ -2.01
RPN11P43588 ECM25YJL201W 1800 nt2.51□□□□□ -2.01
RPN11P43588 YJL016WYJL016W 1686 nt2.5□□□□□ -2.01
RPN11P43588 PEP1YBL017C 4740 nt2.5□□□□□ -2.01
RPN11P43588 SVL3YPL032C 2478 nt2.5□□□□□ -2.01
RPN11P43588 ATP17YDR377W 306 nt2.5□□□□□ -2.01
RPN11P43588 RAM2YKL019W 951 nt2.5□□□□□ -2.01
RPN11P43588 YLR434CYLR434C 384 nt2.5□□□□□ -2.01
RPN11P43588 VPS52YDR484W 1926 nt2.5□□□□□ -2.01
RPN11P43588 BNR1YIL159W 4128 nt2.49□□□□□ -2.01
RPN11P43588 YDL068WYDL068W 330 nt2.49□□□□□ -2.01
RPN11P43588 SEC31YDL195W 3822 nt2.49□□□□□ -2.01
RPN11P43588 YER068C-AYER068C-A 432 nt2.49□□□□□ -2.01
RPN11P43588 YLR287CYLR287C 1068 nt2.49□□□□□ -2.01
RPN11P43588 UBC7YMR022W 498 nt2.49□□□□□ -2.01
RPN11P43588 MGR1YCL044C 1254 nt2.49□□□□□ -2.01
RPN11P43588 RUD3YOR216C 1455 nt2.49□□□□□ -2.01
RPN11P43588 TRS130YMR218C 3309 nt2.48□□□□□ -2.01
RPN11P43588 YER172C-AYER172C-A 381 nt2.48□□□□□ -2.01
RPN11P43588 COX1Q0045 1605 nt2.48□□□□□ -2.01
RPN11P43588 YSW1YBR148W 1830 nt2.47□□□□□ -2.01
RPN11P43588 IRC10YOL015W 1761 nt2.47□□□□□ -2.01
RPN11P43588 VOA1YGR106C 798 nt2.47□□□□□ -2.01
RPN11P43588 YHL009W-AYHL009W-A 1242 nt2.47□□□□□ -2.01
RPN11P43588 RPL40AYIL148W 387 nt2.47□□□□□ -2.01
RPN11P43588 PFF1YBR074W 2931 nt2.47□□□□□ -2.01
RPN11P43588 DCP2YNL118C 2913 nt2.46□□□□□ -2.02
RPN11P43588 YDL041WYDL041W 354 nt2.46□□□□□ -2.02
RPN11P43588 snR79snR79 84 nt2.46□□□□□ -2.02
RPN11P43588 HIT1YJR055W 495 nt2.46□□□□□ -2.02
RPN11P43588 YLR458WYLR458W 381 nt2.46□□□□□ -2.02
Retrieved 100 of 7,029 protein–RNA pairs in 27.8 ms