Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.457e-9■■■■■ 29.6
YBX3P16989 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.71■□□□□ 0.437e-9■■■■■ 29.6
YBX3P16989 EMC10-208ENST00000601780 2178 ntTSL 1 (best)28.94■■■□□ 2.222e-8■■■■■ 29.6
YBX3P16989 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.162e-8■■■■■ 29.6
YBX3P16989 EMC10-207ENST00000599293 1926 ntTSL 328.53■■■□□ 2.162e-8■■■■■ 29.6
YBX3P16989 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.262e-8■■■■■ 29.6
YBX3P16989 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.115e-8■■■■■ 29.6
YBX3P16989 MTA2-202ENST00000524902 2577 ntTSL 1 (best) BASIC13.51□□□□□ -0.255e-8■■■■■ 29.6
YBX3P16989 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.031e-7■■■■■ 29.5
YBX3P16989 DHX9-206ENST00000483416 814 ntTSL 522.24■■□□□ 1.152e-9■■■■■ 29.5
YBX3P16989 SLC44A2-208ENST00000588465 1487 ntTSL 1 (best)24.21■■□□□ 1.472e-6■■■■■ 29.5
YBX3P16989 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.112e-6■■■■■ 29.5
YBX3P16989 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.68■□□□□ 0.12e-6■■■■■ 29.5
YBX3P16989 SLC44A2-206ENST00000588393 1154 ntTSL 515.4■□□□□ 0.062e-6■■■■■ 29.5
YBX3P16989 SLC44A2-202ENST00000407327 3301 ntTSL 1 (best) BASIC10.44□□□□□ -0.742e-6■■■■■ 29.5
YBX3P16989 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -08e-14■■■■■ 29.5
YBX3P16989 CENPN-208ENST00000568445 591 ntTSL 59.5□□□□□ -0.891e-9■■■■■ 29.4
YBX3P16989 DIAPH1-206ENST00000468119 619 ntTSL 415.07■□□□□ 04e-12■■■■■ 29.4
YBX3P16989 METTL26-213ENST00000568830 590 ntTSL 325.11■■□□□ 1.616e-9■■■■■ 29.4
YBX3P16989 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.85■■□□□ 1.574e-9■■■■■ 29.4
YBX3P16989 RMND1-201ENST00000336451 1413 ntTSL 2 BASIC11.69□□□□□ -0.543e-7■■■■■ 29.4
YBX3P16989 MACROD1-207ENST00000543422 403 ntTSL 318.99■□□□□ 0.634e-7■■■■■ 29.3
YBX3P16989 ARHGAP35-204ENST00000598548 572 ntTSL 415.66■□□□□ 0.12e-9■■■■■ 29.2
YBX3P16989 ARID1A-210ENST00000636072 1128 ntTSL 518.77■□□□□ 0.62e-8■■■■■ 29.2
YBX3P16989 ARID1A-214ENST00000636794 1068 ntTSL 515.91■□□□□ 0.142e-8■■■■■ 29.2
YBX3P16989 ACTN1-221ENST00000556571 568 ntTSL 416.71■□□□□ 0.272e-8■■■■■ 29.2
YBX3P16989 ACTN1-210ENST00000553779 530 ntTSL 413.57□□□□□ -0.242e-8■■■■■ 29.2
YBX3P16989 SERPINF1-203ENST00000570820 820 ntTSL 216.83■□□□□ 0.286e-7■■■■■ 29.2
YBX3P16989 ICAM2-214ENST00000583684 892 ntTSL 526.27■■□□□ 1.83e-6■■■■■ 29.2
YBX3P16989 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.83e-6■■■■■ 29.2
YBX3P16989 ICAM2-211ENST00000581417 1114 ntTSL 522.83■■□□□ 1.253e-6■■■■■ 29.2
YBX3P16989 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.253e-6■■■■■ 29.2
YBX3P16989 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.68■■□□□ 1.223e-6■■■■■ 29.2
YBX3P16989 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.68■■□□□ 1.223e-6■■■■■ 29.2
YBX3P16989 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.053e-6■■■■■ 29.2
YBX3P16989 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.053e-6■■■■■ 29.2
YBX3P16989 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.623e-6■■■■■ 29.2
YBX3P16989 CDCA2-205ENST00000523454 922 ntTSL 55.84□□□□□ -1.472e-9■■■■■ 29.2
YBX3P16989 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.433e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC23.25■■□□□ 1.313e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-209ENST00000464228 861 ntTSL 1 (best)21.44■■□□□ 1.023e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21.3■■□□□ 13e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-220ENST00000497031 560 ntTSL 320.73■□□□□ 0.913e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-217ENST00000490426 1027 ntTSL 219.56■□□□□ 0.723e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.33e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-214ENST00000483795 1913 ntTSL 216.57■□□□□ 0.243e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC15.86■□□□□ 0.133e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-210ENST00000465527 787 ntTSL 27.31□□□□□ -1.243e-7■■■■■ 29.2
YBX3P16989 ITGB1BP1-207ENST00000460720 582 ntTSL 26.58□□□□□ -1.363e-7■■■■■ 29.2
YBX3P16989 SAP30BP-212ENST00000580322 1558 ntTSL 526.18■■□□□ 1.782e-7■■■■■ 29.2
YBX3P16989 SAP30BP-201ENST00000293208 1272 ntTSL 522.89■■□□□ 1.252e-7■■■■■ 29.2
YBX3P16989 SAP30BP-221ENST00000583536 1000 ntTSL 321.37■■□□□ 1.012e-7■■■■■ 29.2
YBX3P16989 SAP30BP-220ENST00000583329 998 ntTSL 317.2■□□□□ 0.342e-7■■■■■ 29.2
YBX3P16989 SAP30BP-217ENST00000582022 2409 ntTSL 1 (best)15.17■□□□□ 0.022e-7■■■■■ 29.2
YBX3P16989 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC14.92□□□□□ -0.022e-7■■■■■ 29.2
YBX3P16989 SAP30BP-214ENST00000580601 2786 ntTSL 214.66□□□□□ -0.062e-7■■■■■ 29.2
YBX3P16989 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.132e-7■■■■■ 29.2
YBX3P16989 SAP30BP-203ENST00000542343 1011 ntTSL 213.28□□□□□ -0.282e-7■■■■■ 29.2
YBX3P16989 SLC44A1-207ENST00000607701 558 ntTSL 46.67□□□□□ -1.347e-11■■■■■ 29.1
YBX3P16989 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC26.46■■□□□ 1.833e-7■■■■■ 29.1
YBX3P16989 MTIF2-207ENST00000417363 566 ntTSL 323.27■■□□□ 1.323e-9■■■■■ 29
YBX3P16989 MTIF2-206ENST00000412530 580 ntTSL 317.42■□□□□ 0.383e-9■■■■■ 29
YBX3P16989 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.49■■■■□ 3.277e-8■■■■■ 29
YBX3P16989 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.147e-8■■■■■ 29
YBX3P16989 DSCR4-201ENST00000328264 1098 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.364e-7■■■■■ 28.9
YBX3P16989 DSCR4-202ENST00000398948 777 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.594e-7■■■■■ 28.9
YBX3P16989 MACROD1-208ENST00000545464 899 ntTSL 334.32■■■■□ 3.084e-7■■■■■ 28.9
YBX3P16989 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.49■□□□□ 0.071e-7■■■■■ 28.9
YBX3P16989 PTDSS1-204ENST00000517982 1215 ntTSL 216.12■□□□□ 0.171e-7■■■■■ 28.9
YBX3P16989 FLII-228ENST00000582626 573 ntTSL 325.51■■□□□ 1.674e-7■■■■■ 28.8
YBX3P16989 FLII-207ENST00000478416 878 ntTSL 217.09■□□□□ 0.334e-7■■■■■ 28.8
YBX3P16989 FLII-205ENST00000473425 585 ntTSL 414.96□□□□□ -0.014e-7■■■■■ 28.8
YBX3P16989 FLII-225ENST00000581349 582 ntTSL 214.89□□□□□ -0.034e-7■■■■■ 28.8
YBX3P16989 SRSF7-203ENST00000415527 1135 ntTSL 519.66■□□□□ 0.745e-47■■■■■ 28.8
YBX3P16989 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.932e-6■■■■■ 28.8
YBX3P16989 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.682e-6■■■■■ 28.8
YBX3P16989 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.342e-6■■■■■ 28.8
YBX3P16989 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC12.67□□□□□ -0.383e-9■■■■■ 28.7
YBX3P16989 AMD1-207ENST00000612642 4745 ntTSL 1 (best)7.46□□□□□ -1.223e-9■■■■■ 28.7
YBX3P16989 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.05□□□□□ -1.283e-9■■■■■ 28.7
YBX3P16989 AMD1-205ENST00000451850 3121 ntTSL 1 (best)6.74□□□□□ -1.333e-9■■■■■ 28.7
YBX3P16989 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.363e-9■■■■■ 28.7
YBX3P16989 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.552e-8■■■■■ 28.7
YBX3P16989 WAPL-204ENST00000484070 3207 ntTSL 27.05□□□□□ -1.283e-9■■■■■ 28.7
YBX3P16989 IKZF1-213ENST00000471793 1779 ntTSL 223.51■■□□□ 1.351e-8■■■■■ 28.7
YBX3P16989 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC23.48■■□□□ 1.351e-8■■■■■ 28.7
YBX3P16989 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20.43■□□□□ 0.861e-8■■■■■ 28.7
YBX3P16989 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC14.6□□□□□ -0.071e-8■■■■■ 28.7
YBX3P16989 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.51□□□□□ -0.091e-8■■■■■ 28.7
YBX3P16989 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC14.25□□□□□ -0.131e-8■■■■■ 28.7
YBX3P16989 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.23□□□□□ -0.131e-8■■■■■ 28.7
YBX3P16989 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC14.02□□□□□ -0.171e-8■■■■■ 28.7
YBX3P16989 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.9□□□□□ -0.181e-8■■■■■ 28.7
YBX3P16989 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC13.55□□□□□ -0.241e-8■■■■■ 28.7
YBX3P16989 IKZF1-201ENST00000331340 6189 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.511e-8■■■■■ 28.7
YBX3P16989 IKZF1-210ENST00000439701 3572 ntTSL 1 (best) BASIC11.11□□□□□ -0.631e-8■■■■■ 28.7
YBX3P16989 IKZF1-208ENST00000426121 201 ntTSL 1 (best)9.2□□□□□ -0.941e-8■■■■■ 28.7
YBX3P16989 ARRB1-206ENST00000529741 404 ntTSL 320.42■□□□□ 0.864e-9■■■■■ 28.7
YBX3P16989 ARRB1-208ENST00000531012 1744 ntTSL 217.09■□□□□ 0.334e-9■■■■■ 28.7
YBX3P16989 TEX261-205ENST00000478068 3579 ntTSL 29.71□□□□□ -0.861e-8■■■■■ 28.7
Retrieved 100 of 29,075 protein–RNA pairs in 507 ms