Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 HOL1YNR055C 1761 nt8.41□□□□□ -1.06
RPL40BP0CH09 MEP3YPR138C 1470 nt8.4□□□□□ -1.06
RPL40BP0CH09 tL(UAA)B1tL(UAA)B1 84 nt8.38□□□□□ -1.07
RPL40BP0CH09 tL(UAA)B2tL(UAA)B2 84 nt8.38□□□□□ -1.07
RPL40BP0CH09 tL(UAA)DtL(UAA)D 84 nt8.38□□□□□ -1.07
RPL40BP0CH09 SUP51tL(UAA)J 84 nt8.38□□□□□ -1.07
RPL40BP0CH09 tL(UAA)KtL(UAA)K 84 nt8.38□□□□□ -1.07
RPL40BP0CH09 tL(UAA)LtL(UAA)L 84 nt8.38□□□□□ -1.07
RPL40BP0CH09 tL(UAA)NtL(UAA)N 84 nt8.38□□□□□ -1.07
RPL40BP0CH09 CYC3YAL039C 810 nt8.38□□□□□ -1.07
RPL40BP0CH09 YBL095WYBL095W 813 nt8.38□□□□□ -1.07
RPL40BP0CH09 MAE1YKL029C 2010 nt8.37□□□□□ -1.07
RPL40BP0CH09 YJL067WYJL067W 351 nt8.37□□□□□ -1.07
RPL40BP0CH09 TPS1YBR126C 1488 nt8.37□□□□□ -1.07
RPL40BP0CH09 EMC3YKL207W 762 nt8.36□□□□□ -1.07
RPL40BP0CH09 LIP1YMR298W 453 nt8.36□□□□□ -1.07
RPL40BP0CH09 SSN3YPL042C 1668 nt8.36□□□□□ -1.07
RPL40BP0CH09 YMR103CYMR103C 363 nt8.35□□□□□ -1.07
RPL40BP0CH09 PHO23YNL097C 993 nt8.35□□□□□ -1.07
RPL40BP0CH09 FCY1YPR062W 477 nt8.35□□□□□ -1.07
RPL40BP0CH09 COS10YNR075W 1125 nt8.34□□□□□ -1.07
RPL40BP0CH09 TGA1tA(UGC)A 73 nt8.33□□□□□ -1.08
RPL40BP0CH09 tA(UGC)EtA(UGC)E 73 nt8.33□□□□□ -1.08
RPL40BP0CH09 tA(UGC)GtA(UGC)G 73 nt8.33□□□□□ -1.08
RPL40BP0CH09 tA(UGC)LtA(UGC)L 73 nt8.33□□□□□ -1.08
RPL40BP0CH09 tA(UGC)OtA(UGC)O 73 nt8.33□□□□□ -1.08
RPL40BP0CH09 THP3YPR045C 1413 nt8.33□□□□□ -1.08
RPL40BP0CH09 ILV3YJR016C 1758 nt8.33□□□□□ -1.08
RPL40BP0CH09 OYE2YHR179W 1203 nt8.32□□□□□ -1.08
RPL40BP0CH09 ADH3YMR083W 1128 nt8.32□□□□□ -1.08
RPL40BP0CH09 BNI5YNL166C 1347 nt8.31□□□□□ -1.08
RPL40BP0CH09 BET2YPR176C 978 nt8.31□□□□□ -1.08
RPL40BP0CH09 PHB2YGR231C 933 nt8.3□□□□□ -1.08
RPL40BP0CH09 MOB1YIL106W 945 nt8.3□□□□□ -1.08
RPL40BP0CH09 RSC8YFR037C 1674 nt8.3□□□□□ -1.08
RPL40BP0CH09 BRR1YPR057W 1026 nt8.29□□□□□ -1.08
RPL40BP0CH09 SPS100YHR139C 981 nt8.28□□□□□ -1.08
RPL40BP0CH09 MSC1YML128C 1542 nt8.28□□□□□ -1.08
RPL40BP0CH09 GDH1YOR375C 1365 nt8.27□□□□□ -1.09
RPL40BP0CH09 YGR210CYGR210C 1236 nt8.26□□□□□ -1.09
RPL40BP0CH09 FSH2YMR222C 672 nt8.26□□□□□ -1.09
RPL40BP0CH09 SPE2YOL052C 1191 nt8.26□□□□□ -1.09
RPL40BP0CH09 TOA2YKL058W 369 nt8.25□□□□□ -1.09
RPL40BP0CH09 HXT1YHR094C 1713 nt8.25□□□□□ -1.09
RPL40BP0CH09 DBP1YPL119C 1854 nt8.24□□□□□ -1.09
RPL40BP0CH09 YIL100C-AYIL100C-A 339 nt8.24□□□□□ -1.09
RPL40BP0CH09 YOR325WYOR325W 474 nt8.24□□□□□ -1.09
RPL40BP0CH09 LEU9YOR108W 1815 nt8.24□□□□□ -1.09
RPL40BP0CH09 HIS2YFR025C 1008 nt8.23□□□□□ -1.09
RPL40BP0CH09 YJL160CYJL160C 864 nt8.23□□□□□ -1.09
RPL40BP0CH09 RAS2YNL098C 969 nt8.23□□□□□ -1.09
RPL40BP0CH09 YMR209CYMR209C 1374 nt8.22□□□□□ -1.09
RPL40BP0CH09 TMA23YMR269W 636 nt8.22□□□□□ -1.09
RPL40BP0CH09 YMR210WYMR210W 1350 nt8.22□□□□□ -1.09
RPL40BP0CH09 MET2YNL277W 1461 nt8.21□□□□□ -1.09
RPL40BP0CH09 SRY1YKL218C 981 nt8.21□□□□□ -1.1
RPL40BP0CH09 EAF3YPR023C 1206 nt8.21□□□□□ -1.1
RPL40BP0CH09 COQ8YGL119W 1506 nt8.2□□□□□ -1.1
RPL40BP0CH09 SHY1YGR112W 1170 nt8.2□□□□□ -1.1
RPL40BP0CH09 SRP102YKL154W 735 nt8.2□□□□□ -1.1
RPL40BP0CH09 ASP3-1YLR155C 1089 nt8.2□□□□□ -1.1
RPL40BP0CH09 ASP3-2YLR157C 1089 nt8.2□□□□□ -1.1
RPL40BP0CH09 ASP3-3YLR158C 1089 nt8.2□□□□□ -1.1
RPL40BP0CH09 ASP3-4YLR160C 1089 nt8.2□□□□□ -1.1
RPL40BP0CH09 YBL086CYBL086C 1401 nt8.2□□□□□ -1.1
RPL40BP0CH09 URA6YKL024C 615 nt8.19□□□□□ -1.1
RPL40BP0CH09 RIM2YBR192W 1134 nt8.19□□□□□ -1.1
RPL40BP0CH09 RPR1RPR1 369 nt8.18□□□□□ -1.1
RPL40BP0CH09 OPI10YOL032W 741 nt8.18□□□□□ -1.1
RPL40BP0CH09 MAS2YHR024C 1449 nt8.18□□□□□ -1.1
RPL40BP0CH09 UGP1YKL035W 1500 nt8.18□□□□□ -1.1
RPL40BP0CH09 SEC61YLR378C 1443 nt8.17□□□□□ -1.1
RPL40BP0CH09 ERO1YML130C 1692 nt8.17□□□□□ -1.1
RPL40BP0CH09 TRT2tT(CGU)K 72 nt8.16□□□□□ -1.1
RPL40BP0CH09 ABZ2YMR289W 1125 nt8.16□□□□□ -1.1
RPL40BP0CH09 YPL108WYPL108W 507 nt8.16□□□□□ -1.1
RPL40BP0CH09 GND2YGR256W 1479 nt8.15□□□□□ -1.1
RPL40BP0CH09 IMO32YGR031W 1029 nt8.15□□□□□ -1.1
RPL40BP0CH09 POR2YIL114C 846 nt8.15□□□□□ -1.1
RPL40BP0CH09 ARO8YGL202W 1503 nt8.14□□□□□ -1.11
RPL40BP0CH09 PET494YNR045W 1470 nt8.14□□□□□ -1.11
RPL40BP0CH09 CWC15YDR163W 528 nt8.14□□□□□ -1.11
RPL40BP0CH09 SAM2YDR502C 1155 nt8.13□□□□□ -1.11
RPL40BP0CH09 DDI1YER143W 1287 nt8.13□□□□□ -1.11
RPL40BP0CH09 OXA1YER154W 1209 nt8.13□□□□□ -1.11
RPL40BP0CH09 YER188WYER188W 720 nt8.13□□□□□ -1.11
RPL40BP0CH09 TAD2YJL035C 753 nt8.13□□□□□ -1.11
RPL40BP0CH09 CCT2YIL142W 1584 nt8.13□□□□□ -1.11
RPL40BP0CH09 ADA2YDR448W 1305 nt8.12□□□□□ -1.11
RPL40BP0CH09 KES1YPL145C 1305 nt8.12□□□□□ -1.11
RPL40BP0CH09 FUS3YBL016W 1062 nt8.12□□□□□ -1.11
RPL40BP0CH09 KGD2YDR148C 1392 nt8.11□□□□□ -1.11
RPL40BP0CH09 FUB1YCR076C 753 nt8.11□□□□□ -1.11
RPL40BP0CH09 YFR036W-AYFR036W-A 651 nt8.11□□□□□ -1.11
RPL40BP0CH09 YLR280CYLR280C 351 nt8.11□□□□□ -1.11
RPL40BP0CH09 DIG1YPL049C 1359 nt8.1□□□□□ -1.11
RPL40BP0CH09 SGA1YIL099W 1650 nt8.09□□□□□ -1.11
RPL40BP0CH09 URA1YKL216W 945 nt8.09□□□□□ -1.11
RPL40BP0CH09 PSD1YNL169C 1503 nt8.08□□□□□ -1.12
RPL40BP0CH09 SFP1YLR403W 2052 nt8.08□□□□□ -1.12
Retrieved 100 of 7,029 protein–RNA pairs in 25.1 ms