Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC31.43■■■□□ 2.62
COL17A1Q9UMD9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 NAPSB-206ENST00000562112 1266 ntBASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 AC137767.1-201ENST00000602918 1920 ntBASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
COL17A1Q9UMD9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL17A1Q9UMD9 AC026396.1-201ENST00000419388 421 ntBASIC31.41■■■□□ 2.62
COL17A1Q9UMD9 FITM1-202ENST00000559294 800 ntBASIC31.41■■■□□ 2.62
COL17A1Q9UMD9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
COL17A1Q9UMD9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
COL17A1Q9UMD9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL17A1Q9UMD9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
COL17A1Q9UMD9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 MYC-208ENST00000641036 567 ntBASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
COL17A1Q9UMD9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 KRT16P5-201ENST00000455284 522 ntBASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC31.39■■■□□ 2.62
COL17A1Q9UMD9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC31.39■■■□□ 2.61
COL17A1Q9UMD9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
COL17A1Q9UMD9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC31.38■■■□□ 2.61
COL17A1Q9UMD9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC31.38■■■□□ 2.61
COL17A1Q9UMD9 AL353807.1-201ENST00000427475 662 ntBASIC31.38■■■□□ 2.61
COL17A1Q9UMD9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
COL17A1Q9UMD9 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC31.38■■■□□ 2.61
COL17A1Q9UMD9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL17A1Q9UMD9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 AC073195.1-201ENST00000607241 877 ntBASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC31.37■■■□□ 2.61
COL17A1Q9UMD9 AC092068.2-201ENST00000590491 1708 ntBASIC31.36■■■□□ 2.61
COL17A1Q9UMD9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL17A1Q9UMD9 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
COL17A1Q9UMD9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC31.36■■■□□ 2.61
COL17A1Q9UMD9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC31.36■■■□□ 2.61
COL17A1Q9UMD9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL17A1Q9UMD9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 AC091076.1-201ENST00000610741 619 ntBASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL17A1Q9UMD9 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 RER1-204ENST00000378518 522 ntTSL 3 BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 C11orf96-202ENST00000528572 1834 ntBASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
COL17A1Q9UMD9 KRT18P48-201ENST00000434763 852 ntBASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC31.33■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms