Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 AL390955.1-201ENST00000428694 934 ntBASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 HTR7P1-201ENST00000538670 1336 ntBASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 AC007322.3-201ENST00000426526 701 ntBASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 NUDT16P1-203ENST00000513809 620 ntBASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 AL358472.4-201ENST00000633140 710 ntBASIC31.52■■■□□ 2.64
COL17A1Q9UMD9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
COL17A1Q9UMD9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 MIR1238-201ENST00000408483 83 ntBASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 CRYGFP-201ENST00000418459 633 ntBASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 ISCU-203ENST00000431221 799 ntTSL 2 BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 AC010203.1-204ENST00000548782 407 ntBASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL17A1Q9UMD9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC31.5■■■□□ 2.63
COL17A1Q9UMD9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC31.5■■■□□ 2.63
COL17A1Q9UMD9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
COL17A1Q9UMD9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC31.5■■■□□ 2.63
COL17A1Q9UMD9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL17A1Q9UMD9 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC31.5■■■□□ 2.63
COL17A1Q9UMD9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC31.5■■■□□ 2.63
COL17A1Q9UMD9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL17A1Q9UMD9 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC31.49■■■□□ 2.63
COL17A1Q9UMD9 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
COL17A1Q9UMD9 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC31.49■■■□□ 2.63
COL17A1Q9UMD9 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC31.49■■■□□ 2.63
COL17A1Q9UMD9 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
COL17A1Q9UMD9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
COL17A1Q9UMD9 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
COL17A1Q9UMD9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC31.48■■■□□ 2.63
COL17A1Q9UMD9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
COL17A1Q9UMD9 AL031963.3-201ENST00000606441 850 ntBASIC31.48■■■□□ 2.63
COL17A1Q9UMD9 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 FDX2-207ENST00000494368 584 ntTSL 4 BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL17A1Q9UMD9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 UNC93B2-201ENST00000285383 730 ntBASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 DUSP5P1-201ENST00000441325 1139 ntBASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 KRT18P56-201ENST00000507275 550 ntBASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC31.46■■■□□ 2.63
COL17A1Q9UMD9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL17A1Q9UMD9 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL17A1Q9UMD9 KRT18P22-201ENST00000402024 1347 ntBASIC31.45■■■□□ 2.63
COL17A1Q9UMD9 AC003102.1-202ENST00000563394 1796 ntBASIC31.45■■■□□ 2.63
COL17A1Q9UMD9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
COL17A1Q9UMD9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
COL17A1Q9UMD9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC31.45■■■□□ 2.62
COL17A1Q9UMD9 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC31.45■■■□□ 2.62
COL17A1Q9UMD9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL17A1Q9UMD9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 326.6 ms