Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 VFA1YER128W 612 nt2.98□□□□□ -1.93
RPN11P43588 YER165C-AYER165C-A 357 nt2.98□□□□□ -1.93
RPN11P43588 YGR042WYGR042W 816 nt2.98□□□□□ -1.93
RPN11P43588 RSR1YGR152C 819 nt2.98□□□□□ -1.93
RPN11P43588 YGR242WYGR242W 309 nt2.98□□□□□ -1.93
RPN11P43588 DFG10YIL049W 762 nt2.98□□□□□ -1.93
RPN11P43588 YIR036W-AYIR036W-A 402 nt2.98□□□□□ -1.93
RPN11P43588 SYM1YLR251W 594 nt2.98□□□□□ -1.93
RPN11P43588 SSN8YNL025C 972 nt2.98□□□□□ -1.93
RPN11P43588 YOL085W-AYOL085W-A 213 nt2.98□□□□□ -1.93
RPN11P43588 SSP1YHR184W 1716 nt2.98□□□□□ -1.93
RPN11P43588 GIN4YDR507C 3429 nt2.97□□□□□ -1.93
RPN11P43588 KHA1YJL094C 2622 nt2.97□□□□□ -1.93
RPN11P43588 SPO13YHR014W 876 nt2.97□□□□□ -1.93
RPN11P43588 YJL007CYJL007C 315 nt2.97□□□□□ -1.93
RPN11P43588 TOA1YOR194C 861 nt2.97□□□□□ -1.93
RPN11P43588 SVS1YPL163C 783 nt2.97□□□□□ -1.93
RPN11P43588 YPR014CYPR014C 330 nt2.97□□□□□ -1.93
RPN11P43588 snR41snR41 95 nt2.97□□□□□ -1.93
RPN11P43588 TCP1YDR212W 1680 nt2.97□□□□□ -1.93
RPN11P43588 SSF2YDR312W 1362 nt2.97□□□□□ -1.93
RPN11P43588 SSF1YHR066W 1362 nt2.97□□□□□ -1.93
RPN11P43588 MSB1YOR188W 3414 nt2.97□□□□□ -1.93
RPN11P43588 LCB4YOR171C 1875 nt2.96□□□□□ -1.93
RPN11P43588 SMC6YLR383W 3345 nt2.96□□□□□ -1.93
RPN11P43588 IOC3YFR013W 2364 nt2.96□□□□□ -1.94
RPN11P43588 SCD5YOR329C 2619 nt2.96□□□□□ -1.94
RPN11P43588 YDL009CYDL009C 324 nt2.96□□□□□ -1.94
RPN11P43588 ECO1YFR027W 846 nt2.96□□□□□ -1.94
RPN11P43588 YGL042CYGL042C 306 nt2.96□□□□□ -1.94
RPN11P43588 COX13YGL191W 390 nt2.96□□□□□ -1.94
RPN11P43588 YIL012WYIL012W 342 nt2.96□□□□□ -1.94
RPN11P43588 YLR264C-AYLR264C-A 117 nt2.96□□□□□ -1.94
RPN11P43588 RPS28BYLR264W 204 nt2.96□□□□□ -1.94
RPN11P43588 NGL1YOL042W 1092 nt2.96□□□□□ -1.94
RPN11P43588 REG1YDR028C 3045 nt2.96□□□□□ -1.94
RPN11P43588 BIT61YJL058C 1632 nt2.96□□□□□ -1.94
RPN11P43588 YCK2YNL154C 1641 nt2.96□□□□□ -1.94
RPN11P43588 SQS1YNL224C 2304 nt2.96□□□□□ -1.94
RPN11P43588 GIS4YML006C 2325 nt2.95□□□□□ -1.94
RPN11P43588 BRP1YGL007W 378 nt2.95□□□□□ -1.94
RPN11P43588 YGL015CYGL015C 393 nt2.95□□□□□ -1.94
RPN11P43588 PEX4YGR133W 552 nt2.95□□□□□ -1.94
RPN11P43588 SDP1YIL113W 630 nt2.95□□□□□ -1.94
RPN11P43588 YKL044WYKL044W 321 nt2.95□□□□□ -1.94
RPN11P43588 MCR1YKL150W 909 nt2.95□□□□□ -1.94
RPN11P43588 YLR302CYLR302C 363 nt2.95□□□□□ -1.94
RPN11P43588 PBI2YNL015W 228 nt2.95□□□□□ -1.94
RPN11P43588 GCD10YNL062C 1437 nt2.94□□□□□ -1.94
RPN11P43588 DIA2YOR080W 2199 nt2.94□□□□□ -1.94
RPN11P43588 YHR214C-EYHR214C-E 300 nt2.94□□□□□ -1.94
RPN11P43588 YIL174WYIL174W 228 nt2.94□□□□□ -1.94
RPN11P43588 YJL127C-BYJL127C-B 159 nt2.94□□□□□ -1.94
RPN11P43588 YJL222W-AYJL222W-A 228 nt2.94□□□□□ -1.94
RPN11P43588 VPS51YKR020W 495 nt2.94□□□□□ -1.94
RPN11P43588 DAD2YKR083C 402 nt2.94□□□□□ -1.94
RPN11P43588 ENV10YLR065C 546 nt2.94□□□□□ -1.94
RPN11P43588 YAR070CYAR070C 300 nt2.94□□□□□ -1.94
RPN11P43588 YNL146C-AYNL146C-A 195 nt2.94□□□□□ -1.94
RPN11P43588 VID24YBR105C 1089 nt2.94□□□□□ -1.94
RPN11P43588 RPB5YBR154C 648 nt2.94□□□□□ -1.94
RPN11P43588 SPB1YCL054W 2526 nt2.94□□□□□ -1.94
RPN11P43588 YMR018WYMR018W 1545 nt2.93□□□□□ -1.94
RPN11P43588 BI4Q0120 1917 nt2.93□□□□□ -1.94
RPN11P43588 21S_rRNA21S_rRNA 3296 nt2.93□□□□□ -1.94
RPN11P43588 ASM4YDL088C 1587 nt2.93□□□□□ -1.94
RPN11P43588 YER084W-AYER084W-A 513 nt2.93□□□□□ -1.94
RPN11P43588 TIM10YHR005C-A 282 nt2.93□□□□□ -1.94
RPN11P43588 MRPL38YKL170W 417 nt2.93□□□□□ -1.94
RPN11P43588 CDC123YLR215C 1083 nt2.93□□□□□ -1.94
RPN11P43588 HRI1YLR301W 735 nt2.93□□□□□ -1.94
RPN11P43588 LCL1YPL056C 306 nt2.93□□□□□ -1.94
RPN11P43588 YPR145C-AYPR145C-A 237 nt2.93□□□□□ -1.94
RPN11P43588 AVT2YEL064C 1443 nt2.93□□□□□ -1.94
RPN11P43588 CSR2YPR030W 3366 nt2.92□□□□□ -1.94
RPN11P43588 COG3YER157W 2406 nt2.92□□□□□ -1.94
RPN11P43588 ATG13YPR185W 2217 nt2.92□□□□□ -1.94
RPN11P43588 PSK2YOL045W 3306 nt2.92□□□□□ -1.94
RPN11P43588 SUL1YBR294W 2580 nt2.92□□□□□ -1.94
RPN11P43588 BNA7YDR428C 786 nt2.92□□□□□ -1.94
RPN11P43588 OTU2YHL013C 924 nt2.92□□□□□ -1.94
RPN11P43588 YLR154C-HYLR154C-H 132 nt2.92□□□□□ -1.94
RPN11P43588 YLR156C-AYLR156C-A 132 nt2.92□□□□□ -1.94
RPN11P43588 YLR157C-CYLR157C-C 132 nt2.92□□□□□ -1.94
RPN11P43588 YLR159C-AYLR159C-A 132 nt2.92□□□□□ -1.94
RPN11P43588 YOR055WYOR055W 435 nt2.92□□□□□ -1.94
RPN11P43588 YPL034WYPL034W 498 nt2.92□□□□□ -1.94
RPN11P43588 ALG14YBR070C 714 nt2.92□□□□□ -1.94
RPN11P43588 SWD3YBR175W 948 nt2.92□□□□□ -1.94
RPN11P43588 INP52YNL106C 3552 nt2.91□□□□□ -1.94
RPN11P43588 VPS3YDR495C 3036 nt2.91□□□□□ -1.94
RPN11P43588 YDR210W-BYDR210W-B 5313 nt2.91□□□□□ -1.94
RPN11P43588 YDR261W-BYDR261W-B 5313 nt2.91□□□□□ -1.94
RPN11P43588 YFL002W-AYFL002W-A 5313 nt2.91□□□□□ -1.94
RPN11P43588 YGR161W-BYGR161W-B 5313 nt2.91□□□□□ -1.94
RPN11P43588 YLR410W-BYLR410W-B 5313 nt2.91□□□□□ -1.94
RPN11P43588 YCL019WYCL019W 5313 nt2.91□□□□□ -1.94
RPN11P43588 MAK21YDR060W 3078 nt2.91□□□□□ -1.94
RPN11P43588 YER066C-AYER066C-A 501 nt2.91□□□□□ -1.94
RPN11P43588 EMP24YGL200C 612 nt2.91□□□□□ -1.94
Retrieved 100 of 7,029 protein–RNA pairs in 24.2 ms