Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM1O15116 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.83■□□□□ 0.76
LSM1O15116 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM1O15116 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM1O15116 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
LSM1O15116 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
LSM1O15116 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM1O15116 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM1O15116 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM1O15116 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.82■□□□□ 0.76
LSM1O15116 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM1O15116 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.82■□□□□ 0.76
LSM1O15116 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LSM1O15116 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
LSM1O15116 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
LSM1O15116 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.82■□□□□ 0.76
LSM1O15116 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.82■□□□□ 0.76
LSM1O15116 AC138907.5-202ENST00000569484 235 ntBASIC19.82■□□□□ 0.76
LSM1O15116 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.82■□□□□ 0.76
LSM1O15116 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.82■□□□□ 0.76
LSM1O15116 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM1O15116 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.82■□□□□ 0.76
LSM1O15116 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM1O15116 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM1O15116 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM1O15116 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM1O15116 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.81■□□□□ 0.76
LSM1O15116 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.81■□□□□ 0.76
LSM1O15116 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.81■□□□□ 0.76
LSM1O15116 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.81■□□□□ 0.76
LSM1O15116 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 RARRES2P11-201ENST00000635158 484 ntBASIC19.81■□□□□ 0.76
LSM1O15116 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.81■□□□□ 0.76
LSM1O15116 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LSM1O15116 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM1O15116 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.81■□□□□ 0.76
LSM1O15116 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LSM1O15116 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.8■□□□□ 0.76
LSM1O15116 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LSM1O15116 AL162377.1-201ENST00000618844 1793 ntBASIC19.8■□□□□ 0.76
LSM1O15116 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.8■□□□□ 0.76
LSM1O15116 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.8■□□□□ 0.76
LSM1O15116 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.8■□□□□ 0.76
LSM1O15116 AL512408.1-201ENST00000569378 2000 ntBASIC19.8■□□□□ 0.76
LSM1O15116 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.8■□□□□ 0.76
LSM1O15116 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM1O15116 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.8■□□□□ 0.76
LSM1O15116 AC027612.3-201ENST00000413684 1047 ntBASIC19.8■□□□□ 0.76
LSM1O15116 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LSM1O15116 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.8■□□□□ 0.76
LSM1O15116 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.8■□□□□ 0.76
LSM1O15116 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.79■□□□□ 0.76
LSM1O15116 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 IRS3P-201ENST00000223076 1006 ntBASIC19.79■□□□□ 0.76
LSM1O15116 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LSM1O15116 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
LSM1O15116 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.79■□□□□ 0.76
LSM1O15116 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LSM1O15116 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.79■□□□□ 0.76
LSM1O15116 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM1O15116 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.79■□□□□ 0.76
LSM1O15116 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.78■□□□□ 0.76
LSM1O15116 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 KRT16P2-201ENST00000414673 1423 ntBASIC19.78■□□□□ 0.76
LSM1O15116 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.78■□□□□ 0.76
LSM1O15116 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
LSM1O15116 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.78■□□□□ 0.76
LSM1O15116 AC105265.2-201ENST00000467189 838 ntBASIC19.78■□□□□ 0.76
LSM1O15116 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms