Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 MIR663A-201ENST00000385250 93 ntBASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 KRT18P29-201ENST00000397031 1267 ntBASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 AP006294.2-201ENST00000641667 209 ntBASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 AL596275.1-201ENST00000423464 877 ntBASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 AC073130.3-201ENST00000624389 2278 ntBASIC27.74■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 BID-214ENST00000617586 542 ntTSL 5 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 RPS2P52-201ENST00000469610 820 ntBASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 AC053503.5-201ENST00000601508 636 ntBASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC27.71■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC27.7■■■□□ 2.03
SENP3-EIF4A1A0A087X0R7 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC27.7■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TESC-206ENST00000541210 936 ntTSL 3 BASIC27.7■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC27.7■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC27.7■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC27.7■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 ITM2C-210ENST00000620962 501 ntBASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC27.69■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 LINC01006-201ENST00000333319 2292 ntBASIC27.69■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms