Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 DUX4L26-201ENST00000489078 1255 ntBASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 CDV3P1-201ENST00000471403 739 ntBASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 AC004812.2-201ENST00000611079 2094 ntBASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 AC120498.8-201ENST00000614275 531 ntBASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 Six3os1_6.1-201ENST00000620790 196 ntBASIC31.77■■■□□ 2.68
COL17A1Q9UMD9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
COL17A1Q9UMD9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC31.76■■■□□ 2.68
COL17A1Q9UMD9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 TPM4P1-201ENST00000436100 807 ntBASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 AC105020.6-201ENST00000621523 1217 ntBASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC31.76■■■□□ 2.67
COL17A1Q9UMD9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 AC006557.6-201ENST00000623071 864 ntBASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL17A1Q9UMD9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 AC079598.2-202ENST00000546624 1451 ntBASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL17A1Q9UMD9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 AC104076.2-201ENST00000448912 469 ntBASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL17A1Q9UMD9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 NMU-205ENST00000511469 756 ntTSL 3 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 TOLLIP-AS1-201ENST00000530897 939 ntBASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC31.72■■■□□ 2.67
COL17A1Q9UMD9 CYP21A1P-202ENST00000354927 1481 ntBASIC31.71■■■□□ 2.67
COL17A1Q9UMD9 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
COL17A1Q9UMD9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
COL17A1Q9UMD9 RBM17P1-201ENST00000453646 1190 ntBASIC31.71■■■□□ 2.67
COL17A1Q9UMD9 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC31.71■■■□□ 2.67
COL17A1Q9UMD9 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
COL17A1Q9UMD9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC31.7■■■□□ 2.67
COL17A1Q9UMD9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC31.7■■■□□ 2.67
COL17A1Q9UMD9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms