Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
LDB2O43679 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB2O43679 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB2O43679 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.8■□□□□ 0.92
LDB2O43679 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.8■□□□□ 0.92
LDB2O43679 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.8■□□□□ 0.92
LDB2O43679 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.8■□□□□ 0.92
LDB2O43679 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.8■□□□□ 0.92
LDB2O43679 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.8■□□□□ 0.92
LDB2O43679 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDB2O43679 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LDB2O43679 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
LDB2O43679 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.79■□□□□ 0.92
LDB2O43679 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 AC245052.3-201ENST00000450182 901 ntBASIC20.79■□□□□ 0.92
LDB2O43679 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 AC006128.1-201ENST00000624704 1661 ntBASIC20.79■□□□□ 0.92
LDB2O43679 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.79■□□□□ 0.92
LDB2O43679 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB2O43679 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB2O43679 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB2O43679 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
LDB2O43679 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB2O43679 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LDB2O43679 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB2O43679 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.78■□□□□ 0.92
LDB2O43679 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.78■□□□□ 0.92
LDB2O43679 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.78■□□□□ 0.92
LDB2O43679 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.78■□□□□ 0.92
LDB2O43679 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB2O43679 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.78■□□□□ 0.92
LDB2O43679 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB2O43679 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.78■□□□□ 0.92
LDB2O43679 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
LDB2O43679 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.77■□□□□ 0.92
LDB2O43679 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.77■□□□□ 0.92
LDB2O43679 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.77■□□□□ 0.92
LDB2O43679 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.77■□□□□ 0.92
LDB2O43679 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.77■□□□□ 0.92
LDB2O43679 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.77■□□□□ 0.92
LDB2O43679 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB2O43679 RBM17P2-201ENST00000616397 1405 ntBASIC20.77■□□□□ 0.91
LDB2O43679 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
LDB2O43679 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.76■□□□□ 0.91
LDB2O43679 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 AC011484.1-201ENST00000377652 1995 ntBASIC20.76■□□□□ 0.91
LDB2O43679 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB2O43679 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.76■□□□□ 0.91
LDB2O43679 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 AC243732.1-201ENST00000612648 864 ntBASIC20.76■□□□□ 0.91
LDB2O43679 MYCNOS-205ENST00000641950 531 ntBASIC20.76■□□□□ 0.91
LDB2O43679 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.76■□□□□ 0.91
LDB2O43679 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
LDB2O43679 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.76■□□□□ 0.91
LDB2O43679 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms