Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 BCL2-203ENST00000589955 5011 ntBASIC14.84□□□□□ -0.03
LINC01549A6NIU2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 AC087239.1-201ENST00000622671 572 ntBASIC14.84□□□□□ -0.03
LINC01549A6NIU2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 AC087289.5-201ENST00000586076 3175 ntBASIC14.84□□□□□ -0.03
LINC01549A6NIU2 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC01549A6NIU2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LINC01549A6NIU2 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LINC01549A6NIU2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
LINC01549A6NIU2 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LINC01549A6NIU2 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC14.83□□□□□ -0.03
LINC01549A6NIU2 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 AC026471.6-201ENST00000622954 1905 ntBASIC14.83□□□□□ -0.04
LINC01549A6NIU2 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
LINC01549A6NIU2 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 EML3-217ENST00000531557 2509 ntTSL 5 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 RPS2-202ENST00000526522 924 ntTSL 2 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 AC073314.1-201ENST00000568729 2216 ntBASIC14.82□□□□□ -0.04
LINC01549A6NIU2 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC14.82□□□□□ -0.04
LINC01549A6NIU2 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC14.81□□□□□ -0.04
LINC01549A6NIU2 MIR4449-201ENST00000578365 66 ntBASIC14.81□□□□□ -0.04
LINC01549A6NIU2 NKILA-201ENST00000613231 537 ntTSL 4 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms