Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.4■□□□□ 0.54
MMP28Q9H239 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.4■□□□□ 0.54
MMP28Q9H239 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.4■□□□□ 0.54
MMP28Q9H239 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.4■□□□□ 0.54
MMP28Q9H239 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MMP28Q9H239 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MMP28Q9H239 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MMP28Q9H239 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
MMP28Q9H239 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
MMP28Q9H239 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MMP28Q9H239 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
MMP28Q9H239 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.39■□□□□ 0.53
MMP28Q9H239 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
MMP28Q9H239 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.39■□□□□ 0.53
MMP28Q9H239 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 AC073314.1-201ENST00000568729 2216 ntBASIC18.39■□□□□ 0.53
MMP28Q9H239 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.39■□□□□ 0.53
MMP28Q9H239 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
MMP28Q9H239 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.39■□□□□ 0.53
MMP28Q9H239 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.38■□□□□ 0.53
MMP28Q9H239 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MMP28Q9H239 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
MMP28Q9H239 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
MMP28Q9H239 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.38■□□□□ 0.53
MMP28Q9H239 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
MMP28Q9H239 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.38■□□□□ 0.53
MMP28Q9H239 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.37■□□□□ 0.53
MMP28Q9H239 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MMP28Q9H239 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.36■□□□□ 0.53
MMP28Q9H239 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
MMP28Q9H239 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.36■□□□□ 0.53
MMP28Q9H239 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
MMP28Q9H239 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.36■□□□□ 0.53
MMP28Q9H239 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
MMP28Q9H239 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.36■□□□□ 0.53
MMP28Q9H239 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.36■□□□□ 0.53
MMP28Q9H239 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.36■□□□□ 0.53
MMP28Q9H239 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.36■□□□□ 0.53
MMP28Q9H239 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
MMP28Q9H239 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MMP28Q9H239 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.36■□□□□ 0.53
MMP28Q9H239 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
MMP28Q9H239 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.35■□□□□ 0.53
MMP28Q9H239 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MMP28Q9H239 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms