Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL17A1Q9UMD9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL17A1Q9UMD9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
COL17A1Q9UMD9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
COL17A1Q9UMD9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.75
COL17A1Q9UMD9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC32.26■■■□□ 2.75
COL17A1Q9UMD9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 OR2A1-AS1-207ENST00000486094 819 ntBASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 AC120498.10-201ENST00000621827 505 ntBASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL17A1Q9UMD9 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 AC008175.2-201ENST00000612840 297 ntBASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC32.24■■■□□ 2.75
COL17A1Q9UMD9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 AC133681.1-201ENST00000465482 601 ntBASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 RNF146-204ENST00000476956 884 ntTSL 2 BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 AL049597.2-201ENST00000565575 961 ntBASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC32.23■■■□□ 2.75
COL17A1Q9UMD9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 MTDHP1-201ENST00000605323 784 ntBASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 AL590326.2-201ENST00000625139 305 ntBASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC32.22■■■□□ 2.75
COL17A1Q9UMD9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
COL17A1Q9UMD9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC32.2■■■□□ 2.75
COL17A1Q9UMD9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.2■■■□□ 2.74
COL17A1Q9UMD9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC32.2■■■□□ 2.74
COL17A1Q9UMD9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
COL17A1Q9UMD9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC32.2■■■□□ 2.74
COL17A1Q9UMD9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 AC100791.3-201ENST00000617619 330 ntBASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 AC092865.7-201ENST00000641832 219 ntBASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 EED-207ENST00000528180 1745 ntTSL 5 BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
COL17A1Q9UMD9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms