Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 DSL1YNL258C 2265 nt3.98□□□□□ -1.77
RPN11P43588 TRM44YPL030W 1704 nt3.98□□□□□ -1.77
RPN11P43588 YME2YMR302C 2553 nt3.98□□□□□ -1.77
RPN11P43588 NUP60YAR002W 1620 nt3.97□□□□□ -1.77
RPN11P43588 UBC5YDR059C 447 nt3.97□□□□□ -1.77
RPN11P43588 HMF1YER057C 390 nt3.97□□□□□ -1.77
RPN11P43588 RPL24BYGR148C 468 nt3.97□□□□□ -1.77
RPN11P43588 ECM34YHL043W 513 nt3.97□□□□□ -1.77
RPN11P43588 RPC25YKL144C 639 nt3.97□□□□□ -1.77
RPN11P43588 YBL068W-AYBL068W-A 237 nt3.97□□□□□ -1.77
RPN11P43588 TPM1YNL079C 600 nt3.97□□□□□ -1.77
RPN11P43588 TYE7YOR344C 876 nt3.97□□□□□ -1.77
RPN11P43588 TRS120YDR407C 3870 nt3.97□□□□□ -1.77
RPN11P43588 NUR1YDL089W 1455 nt3.97□□□□□ -1.77
RPN11P43588 BUD6YLR319C 2367 nt3.96□□□□□ -1.78
RPN11P43588 YCF1YDR135C 4548 nt3.96□□□□□ -1.78
RPN11P43588 AI3Q0060 1248 nt3.96□□□□□ -1.78
RPN11P43588 YEL010WYEL010W 351 nt3.96□□□□□ -1.78
RPN11P43588 SPO11YHL022C 1197 nt3.96□□□□□ -1.78
RPN11P43588 SAM37YMR060C 984 nt3.96□□□□□ -1.78
RPN11P43588 ERG29YMR134W 714 nt3.96□□□□□ -1.78
RPN11P43588 YNL035CYNL035C 1170 nt3.96□□□□□ -1.78
RPN11P43588 FMP41YNL168C 780 nt3.96□□□□□ -1.78
RPN11P43588 YNR071CYNR071C 1029 nt3.96□□□□□ -1.78
RPN11P43588 YOL106WYOL106W 354 nt3.96□□□□□ -1.78
RPN11P43588 RPL18AYOL120C 561 nt3.96□□□□□ -1.78
RPN11P43588 TRM12YML005W 1389 nt3.96□□□□□ -1.78
RPN11P43588 PRS5YOL061W 1491 nt3.96□□□□□ -1.78
RPN11P43588 YOR296WYOR296W 3870 nt3.96□□□□□ -1.78
RPN11P43588 YDR131CYDR131C 1671 nt3.96□□□□□ -1.78
RPN11P43588 GAL11YOL051W 3246 nt3.96□□□□□ -1.78
RPN11P43588 YGR266WYGR266W 2106 nt3.95□□□□□ -1.78
RPN11P43588 LSM4YER112W 564 nt3.95□□□□□ -1.78
RPN11P43588 YLR347W-AYLR347W-A 141 nt3.95□□□□□ -1.78
RPN11P43588 COS1YNL336W 1146 nt3.95□□□□□ -1.78
RPN11P43588 SIP1YDR422C 2448 nt3.95□□□□□ -1.78
RPN11P43588 FAA2YER015W 2235 nt3.95□□□□□ -1.78
RPN11P43588 GIP4YAL031C 2283 nt3.95□□□□□ -1.78
RPN11P43588 ALA1YOR335C 2877 nt3.94□□□□□ -1.78
RPN11P43588 MDM34YGL219C 1380 nt3.94□□□□□ -1.78
RPN11P43588 RPS8BYER102W 603 nt3.94□□□□□ -1.78
RPN11P43588 SRB5YGR104C 924 nt3.94□□□□□ -1.78
RPN11P43588 COX6YHR051W 447 nt3.94□□□□□ -1.78
RPN11P43588 YHR054CYHR054C 1065 nt3.94□□□□□ -1.78
RPN11P43588 URA5YML106W 681 nt3.94□□□□□ -1.78
RPN11P43588 TOM7YNL070W 183 nt3.94□□□□□ -1.78
RPN11P43588 RPS8AYBL072C 603 nt3.94□□□□□ -1.78
RPN11P43588 IBD2YNL164C 1056 nt3.94□□□□□ -1.78
RPN11P43588 snR11snR11 258 nt3.94□□□□□ -1.78
RPN11P43588 GUP1YGL084C 1683 nt3.94□□□□□ -1.78
RPN11P43588 SST2YLR452C 2097 nt3.93□□□□□ -1.78
RPN11P43588 TSC13YDL015C 933 nt3.93□□□□□ -1.78
RPN11P43588 RPP1AYDL081C 321 nt3.93□□□□□ -1.78
RPN11P43588 FCF1YDR339C 570 nt3.93□□□□□ -1.78
RPN11P43588 YDR526CYDR526C 471 nt3.93□□□□□ -1.78
RPN11P43588 YPT35YHR105W 645 nt3.93□□□□□ -1.78
RPN11P43588 YHR214C-DYHR214C-D 294 nt3.93□□□□□ -1.78
RPN11P43588 IRC18YJL037W 675 nt3.93□□□□□ -1.78
RPN11P43588 YJR020WYJR020W 333 nt3.93□□□□□ -1.78
RPN11P43588 PAU23YLR037C 375 nt3.93□□□□□ -1.78
RPN11P43588 YAR069CYAR069C 294 nt3.93□□□□□ -1.78
RPN11P43588 MSN1YOL116W 1149 nt3.93□□□□□ -1.78
RPN11P43588 YGK3YOL128C 1128 nt3.93□□□□□ -1.78
RPN11P43588 FRE8YLR047C 2061 nt3.93□□□□□ -1.78
RPN11P43588 YOL153CYOL153C 1746 nt3.92□□□□□ -1.78
RPN11P43588 REC8YPR007C 2043 nt3.92□□□□□ -1.78
RPN11P43588 APE2YKL157W 2859 nt3.92□□□□□ -1.78
RPN11P43588 SPO73YER046W 432 nt3.92□□□□□ -1.78
RPN11P43588 SEC53YFL045C 765 nt3.92□□□□□ -1.78
RPN11P43588 YGL006W-AYGL006W-A 111 nt3.92□□□□□ -1.78
RPN11P43588 ERV29YGR284C 933 nt3.92□□□□□ -1.78
RPN11P43588 YAL031W-AYAL031W-A 309 nt3.92□□□□□ -1.78
RPN11P43588 YLL037WYLL037W 381 nt3.92□□□□□ -1.78
RPN11P43588 YNL050CYNL050C 813 nt3.92□□□□□ -1.78
RPN11P43588 IST1YNL265C 897 nt3.92□□□□□ -1.78
RPN11P43588 TRM112YNR046W 408 nt3.92□□□□□ -1.78
RPN11P43588 CBP6YBR120C 489 nt3.92□□□□□ -1.78
RPN11P43588 ORC4YPR162C 1590 nt3.92□□□□□ -1.78
RPN11P43588 DSN1YIR010W 1731 nt3.92□□□□□ -1.78
RPN11P43588 YPK9YOR291W 4419 nt3.91□□□□□ -1.78
RPN11P43588 YOR365CYOR365C 2112 nt3.91□□□□□ -1.78
RPN11P43588 PRP11YDL043C 801 nt3.91□□□□□ -1.78
RPN11P43588 RPC11YDR045C 333 nt3.91□□□□□ -1.78
RPN11P43588 BCP1YDR361C 852 nt3.91□□□□□ -1.78
RPN11P43588 YDR509WYDR509W 348 nt3.91□□□□□ -1.78
RPN11P43588 YOS1YER074W-A 258 nt3.91□□□□□ -1.78
RPN11P43588 PTR3YFR029W 2037 nt3.91□□□□□ -1.78
RPN11P43588 YGL074CYGL074C 327 nt3.91□□□□□ -1.78
RPN11P43588 YGL138CYGL138C 1038 nt3.91□□□□□ -1.78
RPN11P43588 VEL1YGL258W 621 nt3.91□□□□□ -1.78
RPN11P43588 RPS25AYGR027C 327 nt3.91□□□□□ -1.78
RPN11P43588 YVH1YIR026C 1095 nt3.91□□□□□ -1.78
RPN11P43588 CIT1YNR001C 1440 nt3.91□□□□□ -1.78
RPN11P43588 NAM2YLR382C 2685 nt3.91□□□□□ -1.78
RPN11P43588 SAG1YJR004C 1953 nt3.91□□□□□ -1.78
RPN11P43588 ATP16YDL004W 483 nt3.9□□□□□ -1.79
RPN11P43588 GPM2YDL021W 936 nt3.9□□□□□ -1.79
RPN11P43588 YEA4YEL004W 1029 nt3.9□□□□□ -1.79
RPN11P43588 RPL23BYER117W 414 nt3.9□□□□□ -1.79
RPN11P43588 OST5YGL226C-A 261 nt3.9□□□□□ -1.79
Retrieved 100 of 7,029 protein–RNA pairs in 36.3 ms