Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 AC026185.1-201ENST00000445748 174 ntBASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 AC137767.1-201ENST00000602918 1920 ntBASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV40A0A0B4J280 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 AC006970.2-201ENST00000450065 779 ntBASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV40A0A0B4J280 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 AP006587.3-201ENST00000525742 1516 ntBASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 HLA-L-209ENST00000420110 1011 ntBASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 UBE2DNL-204ENST00000602536 740 ntBASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 RAP2CP1-201ENST00000605103 478 ntBASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV40A0A0B4J280 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 MFSD11-216ENST00000590393 1141 ntBASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 AP001160.3-201ENST00000601484 763 ntBASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAV40A0A0B4J280 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 MIR663A-201ENST00000385250 93 ntBASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAV40A0A0B4J280 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.39■□□□□ 0.38
TRAV40A0A0B4J280 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms