Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ABCA4P78363 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 AC231657.2-201ENST00000624556 255 ntBASIC18.59■□□□□ 0.57
ABCA4P78363 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.58■□□□□ 0.57
ABCA4P78363 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.58■□□□□ 0.57
ABCA4P78363 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.58■□□□□ 0.57
ABCA4P78363 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.58■□□□□ 0.57
ABCA4P78363 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ABCA4P78363 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ABCA4P78363 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
ABCA4P78363 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
ABCA4P78363 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA4P78363 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA4P78363 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA4P78363 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA4P78363 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
ABCA4P78363 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
ABCA4P78363 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.58■□□□□ 0.56
ABCA4P78363 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ABCA4P78363 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.58■□□□□ 0.56
ABCA4P78363 AC098934.4-201ENST00000564127 592 ntBASIC18.58■□□□□ 0.56
ABCA4P78363 DUSP8P5-201ENST00000422884 1815 ntBASIC18.57■□□□□ 0.56
ABCA4P78363 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.57■□□□□ 0.56
ABCA4P78363 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.57■□□□□ 0.56
ABCA4P78363 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC18.57■□□□□ 0.56
ABCA4P78363 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
ABCA4P78363 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.57■□□□□ 0.56
ABCA4P78363 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
ABCA4P78363 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.56■□□□□ 0.56
ABCA4P78363 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA4P78363 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
ABCA4P78363 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA4P78363 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
ABCA4P78363 AP001160.3-201ENST00000601484 763 ntBASIC18.56■□□□□ 0.56
ABCA4P78363 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA4P78363 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.56■□□□□ 0.56
ABCA4P78363 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
ABCA4P78363 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
ABCA4P78363 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ABCA4P78363 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ABCA4P78363 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.55■□□□□ 0.56
ABCA4P78363 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ABCA4P78363 AC013268.1-206ENST00000638368 961 ntBASIC18.55■□□□□ 0.56
ABCA4P78363 AC112229.1-201ENST00000639295 961 ntBASIC18.55■□□□□ 0.56
ABCA4P78363 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
ABCA4P78363 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ABCA4P78363 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.55■□□□□ 0.56
ABCA4P78363 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.54■□□□□ 0.56
ABCA4P78363 FAM201B-201ENST00000458407 597 ntBASIC18.54■□□□□ 0.56
ABCA4P78363 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.54■□□□□ 0.56
ABCA4P78363 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.54■□□□□ 0.56
ABCA4P78363 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.54■□□□□ 0.56
ABCA4P78363 AC005181.1-201ENST00000604782 1256 ntBASIC18.54■□□□□ 0.56
ABCA4P78363 ANOS2P-203ENST00000472227 1816 ntBASIC18.54■□□□□ 0.56
ABCA4P78363 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA4P78363 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.54■□□□□ 0.56
ABCA4P78363 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.54■□□□□ 0.56
ABCA4P78363 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.54■□□□□ 0.56
ABCA4P78363 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
ABCA4P78363 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA4P78363 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA4P78363 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ABCA4P78363 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA4P78363 PRORSD1P-201ENST00000295112 541 ntBASIC18.53■□□□□ 0.56
ABCA4P78363 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.53■□□□□ 0.56
ABCA4P78363 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA4P78363 TSPY6P-201ENST00000448518 926 ntBASIC18.53■□□□□ 0.56
ABCA4P78363 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.53■□□□□ 0.56
ABCA4P78363 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
ABCA4P78363 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.53■□□□□ 0.56
ABCA4P78363 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.53■□□□□ 0.56
ABCA4P78363 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
ABCA4P78363 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.53■□□□□ 0.56
ABCA4P78363 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.53■□□□□ 0.56
ABCA4P78363 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.53■□□□□ 0.56
ABCA4P78363 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
ABCA4P78363 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.53■□□□□ 0.56
ABCA4P78363 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.53■□□□□ 0.56
ABCA4P78363 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA4P78363 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.53■□□□□ 0.56
ABCA4P78363 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA4P78363 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA4P78363 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
ABCA4P78363 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA4P78363 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ABCA4P78363 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms