Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC33.24■■■□□ 2.91
COL17A1Q9UMD9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC33.24■■■□□ 2.91
COL17A1Q9UMD9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC33.24■■■□□ 2.91
COL17A1Q9UMD9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC33.24■■■□□ 2.91
COL17A1Q9UMD9 AL512625.2-201ENST00000417533 625 ntBASIC33.24■■■□□ 2.91
COL17A1Q9UMD9 UNC93B5-201ENST00000530315 699 ntBASIC33.24■■■□□ 2.91
COL17A1Q9UMD9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
COL17A1Q9UMD9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC33.22■■■□□ 2.91
COL17A1Q9UMD9 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC33.22■■■□□ 2.91
COL17A1Q9UMD9 UBE2SP1-201ENST00000450587 669 ntBASIC33.22■■■□□ 2.91
COL17A1Q9UMD9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC33.22■■■□□ 2.91
COL17A1Q9UMD9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC33.22■■■□□ 2.91
COL17A1Q9UMD9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC33.22■■■□□ 2.91
COL17A1Q9UMD9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC33.22■■■□□ 2.91
COL17A1Q9UMD9 AC004687.1-201ENST00000579003 1625 ntBASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC33.21■■■□□ 2.91
COL17A1Q9UMD9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
COL17A1Q9UMD9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
COL17A1Q9UMD9 AC097658.1-201ENST00000475555 843 ntBASIC33.2■■■□□ 2.91
COL17A1Q9UMD9 TERF1P5-201ENST00000477545 1207 ntBASIC33.2■■■□□ 2.91
COL17A1Q9UMD9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC33.2■■■□□ 2.91
COL17A1Q9UMD9 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC33.2■■■□□ 2.91
COL17A1Q9UMD9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
COL17A1Q9UMD9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC33.2■■■□□ 2.9
COL17A1Q9UMD9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC33.19■■■□□ 2.9
COL17A1Q9UMD9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC33.19■■■□□ 2.9
COL17A1Q9UMD9 KRT18P20-201ENST00000548986 1279 ntBASIC33.19■■■□□ 2.9
COL17A1Q9UMD9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC33.19■■■□□ 2.9
COL17A1Q9UMD9 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL17A1Q9UMD9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL17A1Q9UMD9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 KRT18P21-201ENST00000515767 1272 ntBASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
COL17A1Q9UMD9 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
COL17A1Q9UMD9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC33.17■■■□□ 2.9
COL17A1Q9UMD9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC33.17■■■□□ 2.9
COL17A1Q9UMD9 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC33.17■■■□□ 2.9
COL17A1Q9UMD9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC33.17■■■□□ 2.9
COL17A1Q9UMD9 AP003097.1-201ENST00000530657 1135 ntBASIC33.17■■■□□ 2.9
COL17A1Q9UMD9 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC33.17■■■□□ 2.9
COL17A1Q9UMD9 AC009237.3-201ENST00000393279 1427 ntBASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 AC138907.5-202ENST00000569484 235 ntBASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL17A1Q9UMD9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 LINC01023-201ENST00000606054 436 ntBASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
COL17A1Q9UMD9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms