Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
COL17A1Q9UMD9 GXYLT1P3-201ENST00000453058 1193 ntBASIC33.36■■■□□ 2.93
COL17A1Q9UMD9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC33.36■■■□□ 2.93
COL17A1Q9UMD9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC33.35■■■□□ 2.93
COL17A1Q9UMD9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
COL17A1Q9UMD9 AC073648.6-201ENST00000641589 218 ntBASIC33.35■■■□□ 2.93
COL17A1Q9UMD9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 AC211429.1-201ENST00000415277 523 ntBASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 AC013268.1-206ENST00000638368 961 ntBASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 AC112229.1-201ENST00000639295 961 ntBASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 MME-217ENST00000616757 1315 ntTSL 5 BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC33.34■■■□□ 2.93
COL17A1Q9UMD9 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC33.33■■■□□ 2.93
COL17A1Q9UMD9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
COL17A1Q9UMD9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC33.33■■■□□ 2.93
COL17A1Q9UMD9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC33.33■■■□□ 2.93
COL17A1Q9UMD9 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC33.33■■■□□ 2.93
COL17A1Q9UMD9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
COL17A1Q9UMD9 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
COL17A1Q9UMD9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC33.32■■■□□ 2.92
COL17A1Q9UMD9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
COL17A1Q9UMD9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC33.31■■■□□ 2.92
COL17A1Q9UMD9 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 AC016405.3-201ENST00000607710 860 ntBASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC33.3■■■□□ 2.92
COL17A1Q9UMD9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
COL17A1Q9UMD9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
COL17A1Q9UMD9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
COL17A1Q9UMD9 MIR4497-201ENST00000583208 89 ntBASIC33.29■■■□□ 2.92
COL17A1Q9UMD9 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC33.29■■■□□ 2.92
COL17A1Q9UMD9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC33.29■■■□□ 2.92
COL17A1Q9UMD9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
COL17A1Q9UMD9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC33.28■■■□□ 2.92
COL17A1Q9UMD9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
COL17A1Q9UMD9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC33.28■■■□□ 2.92
COL17A1Q9UMD9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
COL17A1Q9UMD9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC33.28■■■□□ 2.92
COL17A1Q9UMD9 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC33.28■■■□□ 2.92
COL17A1Q9UMD9 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 AL359736.2-201ENST00000621992 437 ntBASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 OR10C1-204ENST00000622521 1039 ntBASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
COL17A1Q9UMD9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 AC010141.2-201ENST00000452426 721 ntBASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC33.26■■■□□ 2.92
COL17A1Q9UMD9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC33.26■■■□□ 2.91
COL17A1Q9UMD9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 BX276092.2-201ENST00000417668 665 ntBASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 AC026366.1-201ENST00000488803 879 ntBASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 AC007322.4-201ENST00000509611 723 ntBASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 AC145676.1-201ENST00000514988 2004 ntBASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 AC091874.3-201ENST00000512672 1195 ntBASIC33.25■■■□□ 2.91
COL17A1Q9UMD9 OXCT2P1-201ENST00000447263 1535 ntBASIC33.24■■■□□ 2.91
Retrieved 100 of 98,524 protein–RNA pairs in 802 ms