Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 AP005435.1-201ENST00000529293 1178 ntBASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 AC233992.3-201ENST00000607491 485 ntBASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BLOC1S4Q9NUP1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 AC010141.3-201ENST00000456659 717 ntBASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 AC079089.2-201ENST00000531211 1277 ntBASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 AL139246.5-201ENST00000606645 996 ntBASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 AC092053.2-201ENST00000640557 1818 ntBASIC24.31■■□□□ 1.48
BLOC1S4Q9NUP1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 AP001330.3-201ENST00000520123 633 ntBASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 GRAMD4P4-201ENST00000613563 1115 ntBASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BLOC1S4Q9NUP1 EDA-201ENST00000338901 1233 ntBASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 AC133561.4-201ENST00000566112 224 ntBASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
BLOC1S4Q9NUP1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 MAG-206ENST00000597035 542 ntTSL 4 BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.28■■□□□ 1.48
BLOC1S4Q9NUP1 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 AC008764.7-201ENST00000593779 1081 ntBASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
BLOC1S4Q9NUP1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
BLOC1S4Q9NUP1 OXCT2P1-201ENST00000447263 1535 ntBASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 MIR939-201ENST00000401314 82 ntBASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 AC099791.1-201ENST00000416440 715 ntBASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 SUDS3P1-201ENST00000505831 966 ntBASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 AL355001.2-201ENST00000620617 1191 ntBASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
BLOC1S4Q9NUP1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.24■■□□□ 1.47
BLOC1S4Q9NUP1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms