Protein–RNA interactions for Protein: P39059

COL15A1, Collagen alpha-1(XV) chain, humanhuman

Predictions only

Length 1,388 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL15A1P39059 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC28.29■■■□□ 2.12
COL15A1P39059 HLA-L-209ENST00000420110 1011 ntBASIC28.29■■■□□ 2.12
COL15A1P39059 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC28.29■■■□□ 2.12
COL15A1P39059 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL15A1P39059 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC28.28■■■□□ 2.12
COL15A1P39059 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL15A1P39059 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.28■■■□□ 2.12
COL15A1P39059 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.28■■■□□ 2.12
COL15A1P39059 AC006015.1-201ENST00000429970 570 ntBASIC28.28■■■□□ 2.12
COL15A1P39059 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
COL15A1P39059 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC28.28■■■□□ 2.12
COL15A1P39059 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
COL15A1P39059 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL15A1P39059 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL15A1P39059 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
COL15A1P39059 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
COL15A1P39059 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL15A1P39059 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC28.27■■■□□ 2.12
COL15A1P39059 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL15A1P39059 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC28.27■■■□□ 2.12
COL15A1P39059 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC28.27■■■□□ 2.12
COL15A1P39059 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
COL15A1P39059 AC004812.2-201ENST00000611079 2094 ntBASIC28.27■■■□□ 2.12
COL15A1P39059 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL15A1P39059 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
COL15A1P39059 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL15A1P39059 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
COL15A1P39059 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
COL15A1P39059 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
COL15A1P39059 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.25■■■□□ 2.11
COL15A1P39059 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC28.25■■■□□ 2.11
COL15A1P39059 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.25■■■□□ 2.11
COL15A1P39059 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.25■■■□□ 2.11
COL15A1P39059 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
COL15A1P39059 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
COL15A1P39059 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
COL15A1P39059 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
COL15A1P39059 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC28.24■■■□□ 2.11
COL15A1P39059 RAP2CP1-201ENST00000605103 478 ntBASIC28.24■■■□□ 2.11
COL15A1P39059 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC28.24■■■□□ 2.11
COL15A1P39059 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL15A1P39059 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC28.24■■■□□ 2.11
COL15A1P39059 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC28.24■■■□□ 2.11
COL15A1P39059 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
COL15A1P39059 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC28.24■■■□□ 2.11
COL15A1P39059 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC28.24■■■□□ 2.11
COL15A1P39059 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC28.24■■■□□ 2.11
COL15A1P39059 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC28.24■■■□□ 2.11
COL15A1P39059 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC28.24■■■□□ 2.11
COL15A1P39059 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
COL15A1P39059 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC28.23■■■□□ 2.11
COL15A1P39059 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.23■■■□□ 2.11
COL15A1P39059 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.23■■■□□ 2.11
COL15A1P39059 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.23■■■□□ 2.11
COL15A1P39059 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
COL15A1P39059 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
COL15A1P39059 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC28.22■■■□□ 2.11
COL15A1P39059 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
COL15A1P39059 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
COL15A1P39059 RARA-203ENST00000394086 2008 ntTSL 2 BASIC28.22■■■□□ 2.11
COL15A1P39059 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
COL15A1P39059 AC080038.1-201ENST00000611274 1154 ntBASIC28.22■■■□□ 2.11
COL15A1P39059 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC28.22■■■□□ 2.11
COL15A1P39059 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
COL15A1P39059 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL15A1P39059 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL15A1P39059 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
COL15A1P39059 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL15A1P39059 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL15A1P39059 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.21■■■□□ 2.11
COL15A1P39059 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.21■■■□□ 2.11
COL15A1P39059 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.21■■■□□ 2.11
COL15A1P39059 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
COL15A1P39059 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL15A1P39059 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL15A1P39059 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
COL15A1P39059 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
COL15A1P39059 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL15A1P39059 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
COL15A1P39059 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC28.2■■■□□ 2.1
COL15A1P39059 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL15A1P39059 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC28.2■■■□□ 2.1
COL15A1P39059 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28.2■■■□□ 2.1
COL15A1P39059 AC137761.2-201ENST00000561729 223 ntBASIC28.2■■■□□ 2.1
COL15A1P39059 AC145350.3-201ENST00000569033 163 ntBASIC28.2■■■□□ 2.1
COL15A1P39059 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL15A1P39059 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC28.19■■■□□ 2.1
COL15A1P39059 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.19■■■□□ 2.1
COL15A1P39059 AC073111.5-205ENST00000641717 521 ntBASIC28.19■■■□□ 2.1
COL15A1P39059 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL15A1P39059 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
COL15A1P39059 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL15A1P39059 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC28.18■■■□□ 2.1
COL15A1P39059 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
COL15A1P39059 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL15A1P39059 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
COL15A1P39059 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC28.18■■■□□ 2.1
COL15A1P39059 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC28.18■■■□□ 2.1
COL15A1P39059 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
COL15A1P39059 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms