Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF540Q8NDQ6 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF540Q8NDQ6 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 AL035685.1-201ENST00000636663 812 ntBASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF540Q8NDQ6 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ZNF540Q8NDQ6 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF540Q8NDQ6 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.45■□□□□ 0.86
ZNF540Q8NDQ6 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF540Q8NDQ6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF540Q8NDQ6 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF540Q8NDQ6 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 SLC25A24-204ENST00000569674 2357 ntBASIC20.44■□□□□ 0.86
ZNF540Q8NDQ6 C11orf96-202ENST00000528572 1834 ntBASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 AC092053.2-201ENST00000640557 1818 ntBASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 KRT8P33-201ENST00000508125 1423 ntBASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.43■□□□□ 0.86
ZNF540Q8NDQ6 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 MIR4508-201ENST00000584178 70 ntBASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF540Q8NDQ6 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 AC019171.1-201ENST00000601251 1056 ntBASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 AL451085.2-201ENST00000605085 799 ntBASIC20.41■□□□□ 0.86
ZNF540Q8NDQ6 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms