Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.3■■□□□ 1
VMP1Q96GC9 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.3■■□□□ 1
VMP1Q96GC9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
VMP1Q96GC9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.3■■□□□ 1
VMP1Q96GC9 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VMP1Q96GC9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.3■■□□□ 1
VMP1Q96GC9 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.3■■□□□ 1
VMP1Q96GC9 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.3■■□□□ 1
VMP1Q96GC9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.3■■□□□ 1
VMP1Q96GC9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.3■■□□□ 1
VMP1Q96GC9 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VMP1Q96GC9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VMP1Q96GC9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.3■■□□□ 1
VMP1Q96GC9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
VMP1Q96GC9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
VMP1Q96GC9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.29■■□□□ 1
VMP1Q96GC9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VMP1Q96GC9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.29■■□□□ 1
VMP1Q96GC9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VMP1Q96GC9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.29■■□□□ 1
VMP1Q96GC9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.29■■□□□ 1
VMP1Q96GC9 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.29■■□□□ 1
VMP1Q96GC9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.29■■□□□ 1
VMP1Q96GC9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.29■■□□□ 1
VMP1Q96GC9 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.29■■□□□ 1
VMP1Q96GC9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
VMP1Q96GC9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VMP1Q96GC9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.28■■□□□ 1
VMP1Q96GC9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.28■■□□□ 1
VMP1Q96GC9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.28■■□□□ 1
VMP1Q96GC9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
VMP1Q96GC9 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.28■■□□□ 1
VMP1Q96GC9 AC141586.4-201ENST00000624558 1573 ntBASIC21.27■■□□□ 1
VMP1Q96GC9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.27■■□□□ 1
VMP1Q96GC9 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VMP1Q96GC9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.27■■□□□ 1
VMP1Q96GC9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.27■■□□□ 1
VMP1Q96GC9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
VMP1Q96GC9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.27■■□□□ 1
VMP1Q96GC9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VMP1Q96GC9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VMP1Q96GC9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VMP1Q96GC9 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VMP1Q96GC9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VMP1Q96GC9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.26■□□□□ 0.99
VMP1Q96GC9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
VMP1Q96GC9 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VMP1Q96GC9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.26■□□□□ 0.99
VMP1Q96GC9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VMP1Q96GC9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.26■□□□□ 0.99
VMP1Q96GC9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
VMP1Q96GC9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VMP1Q96GC9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 AL024507.2-201ENST00000606070 2574 ntBASIC21.25■□□□□ 0.99
VMP1Q96GC9 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.25■□□□□ 0.99
VMP1Q96GC9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.25■□□□□ 0.99
VMP1Q96GC9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.25■□□□□ 0.99
VMP1Q96GC9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.25■□□□□ 0.99
VMP1Q96GC9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.25■□□□□ 0.99
VMP1Q96GC9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VMP1Q96GC9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VMP1Q96GC9 AC008406.3-201ENST00000620001 1374 ntBASIC21.24■□□□□ 0.99
VMP1Q96GC9 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VMP1Q96GC9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.24■□□□□ 0.99
VMP1Q96GC9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.24■□□□□ 0.99
VMP1Q96GC9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
VMP1Q96GC9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VMP1Q96GC9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VMP1Q96GC9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VMP1Q96GC9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VMP1Q96GC9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VMP1Q96GC9 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VMP1Q96GC9 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VMP1Q96GC9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VMP1Q96GC9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VMP1Q96GC9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.23■□□□□ 0.99
VMP1Q96GC9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
VMP1Q96GC9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
VMP1Q96GC9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
VMP1Q96GC9 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VMP1Q96GC9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
VMP1Q96GC9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.23■□□□□ 0.99
VMP1Q96GC9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VMP1Q96GC9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
VMP1Q96GC9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 AC131281.2-201ENST00000520478 145 ntBASIC21.22■□□□□ 0.99
VMP1Q96GC9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.22■□□□□ 0.99
VMP1Q96GC9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms