Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 AL137060.1-201ENST00000618151 2648 ntBASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 AC242852.2-201ENST00000615738 1807 ntBASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 AC139795.1-202ENST00000500444 432 ntBASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF540Q8NDQ6 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ZNF540Q8NDQ6 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
ZNF540Q8NDQ6 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ZNF540Q8NDQ6 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ZNF540Q8NDQ6 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.58■□□□□ 0.89
ZNF540Q8NDQ6 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.58■□□□□ 0.88
ZNF540Q8NDQ6 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.58■□□□□ 0.88
ZNF540Q8NDQ6 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF540Q8NDQ6 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.58■□□□□ 0.88
ZNF540Q8NDQ6 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ZNF540Q8NDQ6 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ZNF540Q8NDQ6 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZNF540Q8NDQ6 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms