Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UBE3DQ7Z6J8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.31■■□□□ 1
UBE3DQ7Z6J8 AL356740.2-201ENST00000601559 647 ntBASIC21.31■■□□□ 1
UBE3DQ7Z6J8 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.31■■□□□ 1
UBE3DQ7Z6J8 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.31■■□□□ 1
UBE3DQ7Z6J8 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
UBE3DQ7Z6J8 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.3■■□□□ 1
UBE3DQ7Z6J8 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
UBE3DQ7Z6J8 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.28■■□□□ 1
UBE3DQ7Z6J8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 FP325331.1-202ENST00000623531 1380 ntBASIC21.27■■□□□ 1
UBE3DQ7Z6J8 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.27■■□□□ 1
UBE3DQ7Z6J8 AL512631.2-201ENST00000604634 923 ntBASIC21.27■■□□□ 1
UBE3DQ7Z6J8 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.27■□□□□ 0.99
UBE3DQ7Z6J8 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3DQ7Z6J8 AC068473.5-201ENST00000616428 2072 ntBASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 LINC01529-204ENST00000636474 1715 ntBASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3DQ7Z6J8 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.24■□□□□ 0.99
UBE3DQ7Z6J8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 DUX4L4-201ENST00000566884 1269 ntBASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.23■□□□□ 0.99
UBE3DQ7Z6J8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBE3DQ7Z6J8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms