Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC3O15379 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC3O15379 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.91■■□□□ 1.1
HDAC3O15379 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC3O15379 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC3O15379 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.91■■□□□ 1.1
HDAC3O15379 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC3O15379 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC3O15379 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC3O15379 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC3O15379 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.91■■□□□ 1.1
HDAC3O15379 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
HDAC3O15379 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.9■■□□□ 1.1
HDAC3O15379 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.9■■□□□ 1.1
HDAC3O15379 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
HDAC3O15379 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
HDAC3O15379 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.89■■□□□ 1.1
HDAC3O15379 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.89■■□□□ 1.1
HDAC3O15379 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HDAC3O15379 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HDAC3O15379 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HDAC3O15379 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
HDAC3O15379 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.89■■□□□ 1.09
HDAC3O15379 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.09
HDAC3O15379 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 AC079630.1-202ENST00000618127 1840 ntBASIC21.88■■□□□ 1.09
HDAC3O15379 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.88■■□□□ 1.09
HDAC3O15379 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
HDAC3O15379 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HDAC3O15379 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HDAC3O15379 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HDAC3O15379 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.87■■□□□ 1.09
HDAC3O15379 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HDAC3O15379 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HDAC3O15379 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
HDAC3O15379 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HDAC3O15379 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HDAC3O15379 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HDAC3O15379 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HDAC3O15379 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.86■■□□□ 1.09
HDAC3O15379 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HDAC3O15379 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HDAC3O15379 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.86■■□□□ 1.09
HDAC3O15379 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.86■■□□□ 1.09
HDAC3O15379 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.86■■□□□ 1.09
HDAC3O15379 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.86■■□□□ 1.09
HDAC3O15379 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.86■■□□□ 1.09
HDAC3O15379 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HDAC3O15379 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.85■■□□□ 1.09
HDAC3O15379 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
HDAC3O15379 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.85■■□□□ 1.09
HDAC3O15379 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.85■■□□□ 1.09
HDAC3O15379 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HDAC3O15379 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.85■■□□□ 1.09
HDAC3O15379 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HDAC3O15379 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.85■■□□□ 1.09
HDAC3O15379 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HDAC3O15379 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.85■■□□□ 1.09
HDAC3O15379 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
HDAC3O15379 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.84■■□□□ 1.09
HDAC3O15379 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.84■■□□□ 1.09
HDAC3O15379 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.84■■□□□ 1.09
HDAC3O15379 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.84■■□□□ 1.09
HDAC3O15379 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.84■■□□□ 1.09
HDAC3O15379 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.84■■□□□ 1.09
HDAC3O15379 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC3O15379 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC3O15379 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC3O15379 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC3O15379 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC3O15379 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC3O15379 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC3O15379 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC3O15379 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
HDAC3O15379 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.83■■□□□ 1.09
HDAC3O15379 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.83■■□□□ 1.09
HDAC3O15379 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
HDAC3O15379 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
HDAC3O15379 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
HDAC3O15379 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.82■■□□□ 1.08
HDAC3O15379 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC3O15379 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC3O15379 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.82■■□□□ 1.08
HDAC3O15379 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC3O15379 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.82■■□□□ 1.08
HDAC3O15379 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms