Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
LSM1O15116 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.68■■□□□ 1.06
LSM1O15116 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.68■■□□□ 1.06
LSM1O15116 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LSM1O15116 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.68■■□□□ 1.06
LSM1O15116 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.68■■□□□ 1.06
LSM1O15116 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LSM1O15116 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LSM1O15116 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
LSM1O15116 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.68■■□□□ 1.06
LSM1O15116 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LSM1O15116 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
LSM1O15116 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LSM1O15116 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.67■■□□□ 1.06
LSM1O15116 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.67■■□□□ 1.06
LSM1O15116 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LSM1O15116 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.67■■□□□ 1.06
LSM1O15116 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
LSM1O15116 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LSM1O15116 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
LSM1O15116 AC079630.1-202ENST00000618127 1840 ntBASIC21.66■■□□□ 1.06
LSM1O15116 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM1O15116 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM1O15116 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
LSM1O15116 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.66■■□□□ 1.06
LSM1O15116 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM1O15116 MIR4508-201ENST00000584178 70 ntBASIC21.66■■□□□ 1.06
LSM1O15116 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM1O15116 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LSM1O15116 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM1O15116 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM1O15116 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
LSM1O15116 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
LSM1O15116 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LSM1O15116 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LSM1O15116 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.65■■□□□ 1.06
LSM1O15116 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
LSM1O15116 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LSM1O15116 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LSM1O15116 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
LSM1O15116 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LSM1O15116 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LSM1O15116 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LSM1O15116 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LSM1O15116 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
LSM1O15116 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM1O15116 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LSM1O15116 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.63■■□□□ 1.05
LSM1O15116 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.63■■□□□ 1.05
LSM1O15116 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM1O15116 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM1O15116 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM1O15116 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.63■■□□□ 1.05
LSM1O15116 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.63■■□□□ 1.05
LSM1O15116 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM1O15116 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.63■■□□□ 1.05
LSM1O15116 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM1O15116 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.62■■□□□ 1.05
LSM1O15116 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM1O15116 AC012354.3-201ENST00000623734 483 ntBASIC21.62■■□□□ 1.05
LSM1O15116 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM1O15116 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM1O15116 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LSM1O15116 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LSM1O15116 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LSM1O15116 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.61■■□□□ 1.05
LSM1O15116 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
LSM1O15116 EP400NL-214ENST00000641289 2402 ntBASIC21.61■■□□□ 1.05
LSM1O15116 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
LSM1O15116 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
LSM1O15116 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.6■■□□□ 1.05
LSM1O15116 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.6■■□□□ 1.05
LSM1O15116 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.6■■□□□ 1.05
LSM1O15116 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.6■■□□□ 1.05
LSM1O15116 AC103834.1-201ENST00000520383 144 ntBASIC21.6■■□□□ 1.05
LSM1O15116 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.6■■□□□ 1.05
LSM1O15116 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.6■■□□□ 1.05
LSM1O15116 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
LSM1O15116 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM1O15116 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
LSM1O15116 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LSM1O15116 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LSM1O15116 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
LSM1O15116 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
LSM1O15116 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LSM1O15116 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LSM1O15116 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.59■■□□□ 1.05
LSM1O15116 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LSM1O15116 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LSM1O15116 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
LSM1O15116 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LSM1O15116 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LSM1O15116 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms